YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260726, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	458 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260726, gi|....

Description	E-value	Query Range	Subject Range
gi\|29894297, gi\|... - gi\|30018756\|ref\|NP_830387.1\| glycerol-3-phosphate-binding protein [Bacillus cereus ATCC 14579], gi\|2... gi\|229126001, gi... - gi\|229126001\|ref\|ZP_04255025.1\| hypothetical protein bcere0015_4640 [Bacillus cereus BDRD-Cer4], gi\|...	2.0E-77	[1..458]	[1..458]
gi\|42735628, gi\|... - gi\|42779711\|ref\|NP_976958.1\| glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding prot...	3.0E-77	[1..458]	[1..458]
gi\|49476836, gi\|... - gi\|49476836\|ref\|YP_034828.1\| glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding prot...	2.0E-76	[1..458]	[1..458]
gi\|52144739, gi\|... - gi\|52144739\|ref\|YP_082089.1\| glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding prot...	2.0E-76	[1..458]	[1..458]
gi\|25298294 - pir\|\|G83784 glycerol-3-phosphate ABC transporter (glycerol-3-phosphate binding protein) BH1079 [impo... gi\|15613642, gi\|... - gi\|15613642\|ref\|NP_241945.1\| glycerol-3-phosphate ABC transporter (glycerol-3-phosphate binding prot...	5.0E-76	[4..458]	[1..459]
gi\|228899253, gi... - gi\|228899253\|ref\|ZP_04063517.1\| hypothetical protein bthur0014_4770 [Bacillus thuringiensis IBL 4222... gi\|228963658, gi... - gi\|228963658\|ref\|ZP_04124804.1\| hypothetical protein bthur0004_5310 [Bacillus thuringiensis serovar ... gi\|75759472, gi\|... - gi\|75759472\|ref\|ZP_00739564.1\| Glycerol-3-phosphate-binding protein [Bacillus thuringiensis serovar ...	1.0E-74	[1..458]	[1..458]
gi\|229131504, gi... - gi\|229131504\|ref\|ZP_04260395.1\| hypothetical protein bcere0014_4700 [Bacillus cereus BDRD-ST196], gi... gi\|163860690, gi... - gi\|89206004\|ref\|ZP_01184568.1\| extracellular solute-binding protein, family 1 [Bacillus weihenstepha...	1.0E-73	[1..458]	[1..458]
gi\|7442890 - pir\|\|E72292 glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein -... gi\|15643877, gi\|... - gi\|4981666\|gb\|AAD36196.1\|AE001770_8 glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-pho...	2.0E-69	[4..453]	[1..432]
gi\|69953927, gi\|... - gi\|69953927\|gb\|AAZ04330.1\| glycerol-3-phosphate ABC transporter [Thermotoga sp. RQ2], gi\|170289475\|r...	2.0E-69	[4..453]	[1..432]
gi\|56962135, gi\|... - gi\|56962135\|ref\|YP_173858.1\| glycerol-3-phosphate ABC transporter substrate-binding protein [Bacillu...	6.0E-67	[1..457]	[1..447]

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Predicted Domain #1

Region A:
Residues: [1-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVKKGAAL LMVATMALSS AACSNSKTEG KPEAQAKVAP VEKNGDKTVI RFWHAMGGKT  60
   61 QGVLDGLVAD YNKSQNKYEI KAEFQGTYEE SLTKFKTMSA TKEAPALVQS SEITTKYMID 120
  121 SKKITPIDSW IKKDKYDTSK LEKAITNYYS VDGKMYSMPF NSSTPVLIYN KDAFAKAGLD 180
  181 PEKAPKTYAE LQEAAKKLTI KEGGNVKQYG FSMLNYGWFF EELLATQGAL YVDNENGRKD 240
  241 AAKKAVFNGK EGQKVFGMLD ELNKAGALGK YGASWDDIRA AFQSGQVAMY LDSSAGVRDL 300
  301 IDASKFNVGV SYIPYPEDSK QNGVVIGGAS LWMTNMVSEE TQQGAWDFMK YLTKPDVQAK 360
  361 WHTATGYFSI NPDAYNEPLV KEQYEKYPQL KVTVDQLQAT KQSPATQGAL ISVFPESRDA 420
  421 VVKALEAMYD GENSKEALDE AAKATDRAIS ISARTSQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.154902
Match:	1eu8A
Description:	D-maltodextrin-binding protein, MBP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	3.92658561501282	bayes_pls_golite062009
transmembrane transporter activity	3.71430307970333	bayes_pls_golite062009
substrate-specific transporter activity	3.34421502810243	bayes_pls_golite062009
primary active transmembrane transporter activity	3.33883206510679	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.33572158012752	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.31947078781945	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.3164655425684	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.3159417475856	bayes_pls_golite062009
active transmembrane transporter activity	3.25041295044206	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.25040168593981	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.16446457499691	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.76254706952599	bayes_pls_golite062009
peptide transporter activity	2.75577307623285	bayes_pls_golite062009
ATPase activity, coupled	2.65558937563899	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	2.58578176144479	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	2.58578176144479	bayes_pls_golite062009
hydrolase activity	2.41680852416007	bayes_pls_golite062009
ATPase activity	2.40029628345531	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.3103850882599	bayes_pls_golite062009
pyrophosphatase activity	2.2348608319417	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.21542452486366	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.21260159167253	bayes_pls_golite062009
oligopeptide transporter activity	1.91036692266394	bayes_pls_golite062009
ion transmembrane transporter activity	1.84929214408108	bayes_pls_golite062009
glycerol transmembrane transporter activity	1.61392010083394	bayes_pls_golite062009
binding	1.54172013140566	bayes_pls_golite062009
alcohol transmembrane transporter activity	1.27823880973711	bayes_pls_golite062009
polyol transmembrane transporter activity	1.27823880973711	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.88623763826001	bayes_pls_golite062009
anion transmembrane transporter activity	0.75669016367838	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	0.752837934477466	bayes_pls_golite062009
polyamine transmembrane transporter activity	0.74959887541426	bayes_pls_golite062009
amine transmembrane transporter activity	0.372828805396439	bayes_pls_golite062009
cation transmembrane transporter activity	0.343508026849565	bayes_pls_golite062009
amine binding	0.27289632147613	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	0.0940079640524907	bayes_pls_golite062009
polyamine-transporting ATPase activity	0.0497853931936705	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.0237973852493387	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: