Protein: | gi|24349970, gi|... |
Organism: | Shewanella oneidensis MR-1 |
Length: | 475 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349970, gi|....
Description | E-value | Query Range |
Subject Range |
|
363.0 | [0..2] | [474..3] |
|
361.0 | [0..1] | [475..1] |
|
360.0 | [0..1] | [473..1] |
|
359.0 | [0..1] | [475..1] |
|
356.0 | [0..3] | [474..4] |
|
356.0 | [0..1] | [474..1] |
|
356.0 | [0..1] | [474..1] |
|
356.0 | [0..2] | [474..3] |
|
355.0 | [0..1] | [473..1] |
Region A: Residues: [1-389] |
1 11 21 31 41 51 | | | | | | 1 MDTILIVDDN HAICQALGLM LEINGYQVLT CHTPDDALNL IAAHDIDLVI QDMNFTRDTT 60 61 SGEEGRQLFY ALRERQPDLP IILMTAWTQL ETAVELVKVG AADYMGKPWD DAKLLNSITN 120 121 LVALYKLACT NHQLERVNSQ RQVAIADAEL CGIVFGSGAM QRCIDLALQL ARSDVSVLIT 180 181 GPNGAGKDKL ADIIHANSPL KNKPFIKVNV GALPMELLEA ELFGAEAGAF TGANKARMGR 240 241 FEAADGGTLF LDEIGNLPLS GQVKLLRVLQ TGEFERLGSH KTLKVKVRVI SATNADLAQD 300 301 IAEGRFREDL FYRLNVIELA LPPLNQRIDD ILPLVKHFVG EGFSLSKPAQ QALLQHRWPG 360 361 NVRELENACK RAALLAQSRV LTEADFGLP |
Detection Method: | |
Confidence: | 74.30103 |
Match: | 1ny5A |
Description: | Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
protein histidine kinase activity | 2.35011582062573 | bayes_pls_golite062009 |
two-component sensor activity | 2.32303301074957 | bayes_pls_golite062009 |
phosphotransferase activity, nitrogenous group as acceptor | 2.28838869071567 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 1.95073642969863 | bayes_pls_golite062009 |
pyrophosphatase activity | 1.91141407779641 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 1.9017593265179 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.90014393273511 | bayes_pls_golite062009 |
carboxylic acid transmembrane transporter activity | 1.82370030183942 | bayes_pls_golite062009 |
organic acid transmembrane transporter activity | 1.79922369980544 | bayes_pls_golite062009 |
transporter activity | 1.55572428045529 | bayes_pls_golite062009 |
amino acid transmembrane transporter activity | 1.52217781539459 | bayes_pls_golite062009 |
ATPase activity | 1.48474288797022 | bayes_pls_golite062009 |
two-component response regulator activity | 1.45919623810582 | bayes_pls_golite062009 |
amine transmembrane transporter activity | 1.4031990658196 | bayes_pls_golite062009 |
transmembrane transporter activity | 1.38483976298883 | bayes_pls_golite062009 |
ATPase activity, coupled | 1.37457738689583 | bayes_pls_golite062009 |
catalytic activity | 1.37148167194523 | bayes_pls_golite062009 |
binding | 1.30574971150356 | bayes_pls_golite062009 |
active transmembrane transporter activity | 1.24278046928678 | bayes_pls_golite062009 |
P-P-bond-hydrolysis-driven transmembrane transporter activity | 1.2014318795788 | bayes_pls_golite062009 |
primary active transmembrane transporter activity | 1.19670408144267 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 1.17063957238561 | bayes_pls_golite062009 |
ATPase activity, coupled to movement of substances | 1.16918853509059 | bayes_pls_golite062009 |
ATPase activity, coupled to transmembrane movement of substances | 1.16885789920943 | bayes_pls_golite062009 |
hydrolase activity | 1.09839981963412 | bayes_pls_golite062009 |
nucleic acid binding | 0.900561861643259 | bayes_pls_golite062009 |
transcription regulator activity | 0.530058973650498 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.5127850474754 | bayes_pls_golite062009 |
ribonucleotide binding | 0.51230334374838 | bayes_pls_golite062009 |
purine nucleotide binding | 0.50688037036449 | bayes_pls_golite062009 |
protein binding | 0.502813311049029 | bayes_pls_golite062009 |
nucleotide binding | 0.49473184426584 | bayes_pls_golite062009 |
DNA binding | 0.460315660888175 | bayes_pls_golite062009 |
branched-chain aliphatic amino acid transmembrane transporter activity | 0.32754685224555 | bayes_pls_golite062009 |
amine-transporting ATPase activity | 0.128277449580549 | bayes_pls_golite062009 |
amino acid-transporting ATPase activity | 0.109938795198381 | bayes_pls_golite062009 |
substrate-specific transporter activity | 0.0838665746103899 | bayes_pls_golite062009 |
Region A: Residues: [390-475] |
1 11 21 31 41 51 | | | | | | 1 PVQARQLSAT NAFALGQAAH LAAAFEPQSH QSVFYSEIHS EAQDVSREDI EAALQQHNGV 60 61 IARVAKSLGL SRQALYRRMD KFGLEK |
Detection Method: | |
Confidence: | 68.69897 |
Match: | 1ojlA |
Description: | Crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding |
Matching Structure (courtesy of the PDB): |