YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372853, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372853, gi|....

Description	E-value	Query Range	Subject Range
gi\|69287966, gi\|... - gi\|69287966\|ref\|ZP_00618123.1\| Binding-protein-dependent transport systems inner membrane component ...	202.0	[0..2]	[294..723]
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	196.0	[0..30]	[298..536]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	178.0	[0..56]	[295..186]
gi\|56420657, gi\|... - gi\|56420657\|ref\|YP_147975.1\| ABC transporter (permease) [Geobacillus kaustophilus HTA426], gi\|563804...	173.0	[0..61]	[295..182]
gi\|10173861, gi\|... - gi\|15613808\|ref\|NP_242111.1\| hypothetical protein BH1245 [Bacillus halodurans C-125], gi\|10173861\|db... gi\|25489748 - pir\|\|E83805 hypothetical protein BH1245 [imported] - Bacillus halodurans (strain C-125)	167.0	[0..60]	[300..192]
gi\|115373087, gi... - gi\|115373087\|ref\|ZP_01460389.1\| maltose transport system permease protein MalF [Stigmatella aurantia...	165.0	[0..5]	[294..349]
gi\|42522758, gi\|... - gi\|42522758\|ref\|NP_968138.1\| maltose/maltodextrin transport permease homologue [Bdellovibrio bacteri...	163.0	[0..7]	[299..444]
gi\|78067816, gi\|... - gi\|78067816\|ref\|YP_370585.1\| ABC spermidine/putrescine transporter, inner membrane subunit [Burkhold...	163.0	[0..3]	[300..30]
gi\|78505622, gi\|... - gi\|78686608\|ref\|ZP_00851373.1\| polyamine ABC transporter, permease protein [Shewanella sp. ANA-3], g...	163.0	[0..1]	[301..1]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKSKLKWL KGRFWTISFP YAWLLLFFAL PFAIVFKISL STAAIAIPPY EATFQYADDV  60
   61 LNIFLHLGNY LMLLDDPLYY TAYLSSLKMA LVSTIGCLII GYPMAYAIAR APARWQTVLL 120
  121 LLVMLPSWTS FLIRVYAWMG ILSNTGIINN SLMWLGIISE PLQILNTNIA VYIGIIYAYL 180
  181 PFMILPLYAT LVKLDMSLIE AASDLGSSRI NTFWKITFPL SKSGVIAGSM LVFIPAVGEF 240
  241 VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASSLAIVMLV LLIIPITLFH RYQARSLEKD 300
  301 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.53893649130886	bayes_pls_golite062009
ion transmembrane transporter activity	4.80599031209315	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
anion transmembrane transporter activity	4.31857901976294	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.91726681273811	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
primary active transmembrane transporter activity	3.78071702105421	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.78024819585319	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.76480875126102	bayes_pls_golite062009
substrate-specific transporter activity	3.65928254714629	bayes_pls_golite062009
cation transmembrane transporter activity	3.63784573073205	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.6315875770239	bayes_pls_golite062009
ATPase activity, coupled	3.13976951511862	bayes_pls_golite062009
ATPase activity	2.90304684848114	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.86272063186416	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.85886572725081	bayes_pls_golite062009
pyrophosphatase activity	2.78799656158331	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.76854894183109	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.76635806953632	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	2.50273280026255	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	2.50273280026255	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.43565961964127	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
hydrolase activity	1.52360037846731	bayes_pls_golite062009
amine transmembrane transporter activity	1.35745015743741	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.35667718087017	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.118846682794	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.86220210518613	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.851725653994868	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0291867591868584	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: