YRC Public Data Repository - Protein Structure Prediction

Protein:	SC160_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	1222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SC160_YEAST.

Description	E-value	Query Range	Subject Range
SCP160 - Essential RNA-binding G protein effector of mating response pathway, mainly associated with nuclear ... SC160_YEAST - Protein SCP160 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCP160 PE=1 SV=3	0.0	[1..1222]	[1..1222]
gi\|157928314, gi... - gi\|168278465\|dbj\|BAG11112.1\| vigilin [synthetic construct], gi\|157928314\|gb\|ABW03453.1\| high density... HDLBP - high density lipoprotein binding protein	0.0	[13..1219]	[2..1193]
VIGLN_MOUSE - Vigilin OS=Mus musculus GN=Hdlbp PE=1 SV=1	0.0	[13..1219]	[2..1193]
VIGLN_RAT - Vigilin OS=Rattus norvegicus GN=Hdlbp PE=1 SV=1	0.0	[13..1219]	[2..1193]
VIGLN_CHICK - Vigilin OS=Gallus gallus GN=HDLBP PE=2 SV=1	0.0	[13..1219]	[2..1195]
CE23530 - high-density lipoprotein-binding protein status:Confirmed UniProt:Q17832 protein_id:CAA91144.2	0.0	[40..1208]	[12..1132]
SPCC550.14 - vigilin YJVE_SCHPO - KH domain-containing protein C550.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC5...	0.0	[2..1221]	[18..1273]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEQTAIDS PPSTVEGSVE TVTTIDSPST TASTIAATAE EHPQLEKKPT PLPSLKDLPS  60
   61 LGSNAAFANV KVSWGPNMKP AVSNSPSPSP SAPSLTTGLG AKRMRSKNIQ EAFTLDLQSQ 120
  121 LSITKPELSR IVQSVKKNHD VSVESTLSKN ARTFLVSGVA ANVHEAKREL V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [172-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKLTKPINAV IEVPSKCKAS IIGSGGRTIR EISDAYEVKI NVSKEVNENS YDEDMDDTTS  60
   61 NVSLFGDFES VNLAKAKILA IVKEETKNAT IKLVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.522879
Match:	1k1gA_
Description:	RNA splicing factor 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	4.12546383654586	bayes_pls_golite062009
nucleic acid binding	3.94829960615623	bayes_pls_golite062009
binding	2.88506305420422	bayes_pls_golite062009
mRNA binding	2.56780637687327	bayes_pls_golite062009
transcription regulator activity	1.92947291634926	bayes_pls_golite062009
DNA binding	1.60641898958006	bayes_pls_golite062009
transcription repressor activity	1.48649836219447	bayes_pls_golite062009
protein binding	1.09698608157472	bayes_pls_golite062009
signal transducer activity	1.00592302262807	bayes_pls_golite062009
molecular transducer activity	1.00592302262807	bayes_pls_golite062009
transcription factor activity	0.693474044974507	bayes_pls_golite062009
catalytic activity	0.1435046019283	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [267-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDEKYLPYID VSEFASDEGD EEVKVQFYKK SGDIVILGPR EKAKATKTSI QDYLKKLASN  60
   61 LDEEKVKIPS KFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.502	0.895	polysome	b.40.4	Nucleic acid-binding proteins
View	Download	0.502	0.895	polysome	a.60.2	RuvA domain 2-like
View	Download	0.502	0.895	polysome	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.631	0.895	polysome	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.616	0.895	polysome	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.476	0.895	polysome	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.466	0.895	polysome	d.58.17	Metal-binding domain
View	Download	0.466	0.895	polysome	d.67.2	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
View	Download	0.460	0.895	polysome	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.449	0.895	polysome	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.438	0.895	polysome	d.58.49	YajQ-like
View	Download	0.435	0.895	polysome	d.186.1	Head-to-tail joining protein W, gpW
View	Download	0.423	0.895	polysome	d.58.3	Protease propeptides/inhibitors
View	Download	0.422	0.895	polysome	d.186.1	Head-to-tail joining protein W, gpW
View	Download	0.415	0.895	polysome	b.84.2	Rudiment single hybrid motif
View	Download	0.413	0.895	polysome	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.410	0.895	polysome	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.394	0.895	polysome	b.40.6	MOP-like
View	Download	0.391	0.895	polysome	d.141.1	Ribosomal protein L6
View	Download	0.389	0.895	polysome	a.77.1	DEATH domain
View	Download	0.389	0.895	polysome	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.382	0.895	polysome	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.382	0.895	polysome	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.378	0.895	polysome	d.57.1	DNA damage-inducible protein DinI
View	Download	0.371	0.895	polysome	a.60.1	SAM/Pointed domain
View	Download	0.361	0.895	polysome	d.58.17	Metal-binding domain
View	Download	0.359	0.895	polysome	d.58.7	RNA-binding domain, RBD
View	Download	0.359	0.895	polysome	a.60.11	Hypothetical protein YjbJ
View	Download	0.355	0.895	polysome	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.352	0.895	polysome	a.60.2	RuvA domain 2-like
View	Download	0.352	0.895	polysome	b.84.2	Rudiment single hybrid motif
View	Download	0.350	0.895	polysome	a.60.3	C-terminal domain of RNA polymerase alpha subunit
View	Download	0.338	0.895	polysome	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.324	0.895	polysome	b.61.3	D-aminopeptidase, middle and C-terminal domains
View	Download	0.322	0.895	polysome	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.322	0.895	polysome	d.58.5	GlnB-like
View	Download	0.317	0.895	polysome	a.60.11	Hypothetical protein YjbJ
View	Download	0.315	0.895	polysome	a.4.1	Homeodomain-like
View	Download	0.304	0.895	polysome	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.303	0.895	polysome	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.301	0.895	polysome	b.84.2	Rudiment single hybrid motif
View	Download	0.294	0.895	polysome	d.109.1	Actin depolymerizing proteins
View	Download	0.292	0.895	polysome	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.285	0.895	polysome	d.109.1	Actin depolymerizing proteins
View	Download	0.284	0.895	polysome	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.276	0.895	polysome	a.60.1	SAM/Pointed domain
View	Download	0.273	0.895	polysome	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.265	0.895	polysome	d.58.7	RNA-binding domain, RBD
View	Download	0.257	0.895	polysome	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.251	0.895	polysome	d.58.7	RNA-binding domain, RBD
View	Download	0.251	0.895	polysome	d.109.1	Actin depolymerizing proteins
View	Download	0.247	0.895	polysome	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.238	0.895	polysome	d.67.2	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
View	Download	0.235	0.895	polysome	d.54.1	Enolase N-terminal domain-like
View	Download	0.230	0.895	polysome	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.226	0.895	polysome	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.225	0.895	polysome	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.222	0.895	polysome	d.52.4	YhbC-like, N-terminal domain
View	Download	0.222	0.895	polysome	d.93.1	SH2 domain
View	Download	0.220	0.895	polysome	d.58.1	4Fe-4S ferredoxins
View	Download	0.219	0.895	polysome	a.77.1	DEATH domain
View	Download	0.219	0.895	polysome	d.58.43	Mechanosensitive channel protein MscS (YggB), C-terminal domain
View	Download	0.214	0.895	polysome	a.44.1	Disulphide-bond formation facilitator (DSBA), insertion domain
View	Download	0.209	0.895	polysome	d.15.6	Superantigen toxins, C-terminal domain
View	Download	0.207	0.895	polysome	a.118.8	TPR-like
View	Download	0.207	0.895	polysome	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.207	0.895	polysome	d.15.7	Immunoglobulin-binding domains
View	Download	0.204	0.895	polysome	d.15.6	Superantigen toxins, C-terminal domain
View	Download	0.204	0.895	polysome	d.129.1	TATA-box binding protein-like
View	Download	0.202	0.895	polysome	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.201	0.895	polysome	d.58.49	YajQ-like
View	Download	0.200	0.895	polysome	d.101.1	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5

Predicted functions:

Term	Confidence	Notes
RNA binding	4.53756130039297	bayes_pls_golite062009
nucleic acid binding	4.20349765519502	bayes_pls_golite062009
binding	3.03029468866374	bayes_pls_golite062009
mRNA binding	2.96669269799942	bayes_pls_golite062009
transcription regulator activity	1.94297875367222	bayes_pls_golite062009
DNA binding	1.62328996594128	bayes_pls_golite062009
transcription repressor activity	1.56066397370123	bayes_pls_golite062009
protein binding	1.16541072642796	bayes_pls_golite062009
signal transducer activity	1.00684766673868	bayes_pls_golite062009
molecular transducer activity	1.00684766673868	bayes_pls_golite062009
transcription factor activity	0.687475481524107	bayes_pls_golite062009
catalytic activity	0.113112541746059	bayes_pls_golite062009
	0.0350881281129536	bayes_pls_golite062009

Predicted Domain #4

Region A:
Residues: [340-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLIDAEELKE KYNVIVTFPS TPDDELVSFV GLRDKVGEAI TYARSSSKSY VVESLDISKA  60
   61 HSKNLTHAKN LIMYFTKY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.221849
Match:	1hh2P_
Description:	S1 domain of NusA; Transcription factor NusA, C-terminal domains; Transcription factor NusA, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [418-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVLKGLEESH PNVKISLPSI QSLPTAETVT IHISAKSDEA NDIKAVRKEL ISFVNNIPPS  60
   61 ETLVIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1e3pA_
Description:	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
Matching Structure (courtesy of the PDB):

Predicted Domain #6

Region A:
Residues: [484-508]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLDYELFGGS IKHCLLASES SVAFV

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [643-701]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANSVARLIGN KGSNLQQIRE KFACQIDIPN EENNNASKDK TVEVTLTGLE YNLTHAKKY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1e3pA_
Description:	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.83603737358696	bayes_pls_golite062009
transcription regulator activity	3.74935939787001	bayes_pls_golite062009
structural molecule activity	3.27216171079692	bayes_pls_golite062009
nucleic acid binding	1.97035850468348	bayes_pls_golite062009
RNA binding	1.82714562401326	bayes_pls_golite062009
binding	1.5466198129438	bayes_pls_golite062009
transcription termination factor activity	1.53584399356788	bayes_pls_golite062009
DNA binding	1.42930679560452	bayes_pls_golite062009
transcription repressor activity	0.805620048597073	bayes_pls_golite062009
ribonuclease activity	0.621577761289592	bayes_pls_golite062009
transcription factor activity	0.599956044396141	bayes_pls_golite062009
telomeric DNA binding	0.55247451742813	bayes_pls_golite062009
protein binding	0.523813050066193	bayes_pls_golite062009
deacetylase activity	0.446316761887039	bayes_pls_golite062009
ATPase activity	0.368110506118156	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.31569932728929	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.2703049141847	bayes_pls_golite062009
pyrophosphatase activity	0.256048137250105	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.237784820115582	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.235837031080758	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.20814642097724	bayes_pls_golite062009
translation initiation factor activity	0.2080607201312	bayes_pls_golite062009
exoribonuclease activity	0.19299160134668	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.158428921465478	bayes_pls_golite062009
catalytic activity	0.10089766806364	bayes_pls_golite062009
ATPase activity, coupled	0.0992081031610161	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.0481402103729352	bayes_pls_golite062009

Predicted Domain #7

Region A:
Residues: [509-642]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFGDYYPNDN SILLVALTED EDFKPSIEEI QASLNKANES LNSLRTKQNN METKTYEFSE  60
   61 EVQDSLFKPS SATWKLIMED ISEQEGHLQI KLHTPEENQL TVRGDEKAAK AANKIFESIL 120
  121 NSPSSKSKMT VNIP

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [702-849]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAAEAKKWAD IITKELIVPV KFHGSLIGPH GTYRNRLQEK YNVFINFPRD NEIVTIRGPS  60
   61 RGVNKAHEEL KALLDFEMEN GHKMVINVPA EHVPRIIGKN GDNINDIRAE YGVEMDFLQK 120
  121 STDPKAQETG EVELEITGSR QNIKDAAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1e3pA_
Description:	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	4.12546383654586	bayes_pls_golite062009
nucleic acid binding	3.94829960615623	bayes_pls_golite062009
binding	2.88506305420422	bayes_pls_golite062009
mRNA binding	2.56780637687327	bayes_pls_golite062009
transcription regulator activity	1.92947291634926	bayes_pls_golite062009
DNA binding	1.60641898958006	bayes_pls_golite062009
transcription repressor activity	1.48649836219447	bayes_pls_golite062009
protein binding	1.09698608157472	bayes_pls_golite062009
signal transducer activity	1.00592302262807	bayes_pls_golite062009
molecular transducer activity	1.00592302262807	bayes_pls_golite062009
transcription factor activity	0.693474044974507	bayes_pls_golite062009
catalytic activity	0.1435046019283	bayes_pls_golite062009

Predicted Domain #8

Region A:
Residues: [850-941]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVESIVAEAS DFVTEVLKID HKYHKSIVGS GGHILREIIS KAGGEEIRNK SVDIPNADSE  60
   61 NKDITVQGPQ KFVKKVVEEI NKIVKDAENS VT

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	11.56
Match:	1khmA
Description:	HnRNP K, KH3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	4.53756130039297	bayes_pls_golite062009
nucleic acid binding	4.20349765519502	bayes_pls_golite062009
binding	3.03029468866374	bayes_pls_golite062009
mRNA binding	2.96669269799942	bayes_pls_golite062009
transcription regulator activity	1.94297875367222	bayes_pls_golite062009
DNA binding	1.62328996594128	bayes_pls_golite062009
transcription repressor activity	1.56066397370123	bayes_pls_golite062009
protein binding	1.16541072642796	bayes_pls_golite062009
signal transducer activity	1.00684766673868	bayes_pls_golite062009
molecular transducer activity	1.00684766673868	bayes_pls_golite062009
transcription factor activity	0.687475481524107	bayes_pls_golite062009
catalytic activity	0.113112541746059	bayes_pls_golite062009
	0.0350881281129536	bayes_pls_golite062009

Predicted Domain #9

Region A:
Residues: [942-1010]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTIDIPAERK GALIGPGGIV RRQLESEFNI NLFVPNKDDP SGKITITGAP ENVEKAEKKI  60
   61 LNEIIRENF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.383689
Match:	1vig__
Description:	Vigilin, KH6
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.72252697400364	bayes_pls_golite062009
nucleic acid binding	3.7132569326175	bayes_pls_golite062009
structural molecule activity	3.13468682204566	bayes_pls_golite062009
DNA binding	3.12689559879854	bayes_pls_golite062009
binding	2.40532042551671	bayes_pls_golite062009
RNA binding	1.76502371106766	bayes_pls_golite062009
transcription regulator activity	1.50283169429524	bayes_pls_golite062009
structure-specific DNA binding	1.10289736160471	bayes_pls_golite062009
single-stranded DNA binding	0.96886436248958	bayes_pls_golite062009
transcription repressor activity	0.805620048597073	bayes_pls_golite062009
transcription factor activity	0.599956044396141	bayes_pls_golite062009
telomeric DNA binding	0.55247451742813	bayes_pls_golite062009
ribonuclease activity	0.498439111185072	bayes_pls_golite062009
sequence-specific DNA binding	0.3506031439435	bayes_pls_golite062009
translation regulator activity	0.31332179848255	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.263197317040851	bayes_pls_golite062009
translation initiation factor activity	0.2080607201312	bayes_pls_golite062009
nuclease activity	0.17660139576327	bayes_pls_golite062009
protein binding	0.152645195799531	bayes_pls_golite062009

Predicted Domain #10

Region A:
Residues: [1011-1082]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DREVDVPASI YEYVSERGAF IQKLRMDLSV NVRFGNTSKK ANKLARAPIE IPLEKVCGST  60
   61 EGENAEKTKF TI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	1sro__
Description:	S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	4.53756130039297	bayes_pls_golite062009
nucleic acid binding	4.20349765519502	bayes_pls_golite062009
binding	3.03029468866374	bayes_pls_golite062009
mRNA binding	2.96669269799942	bayes_pls_golite062009
transcription regulator activity	1.94297875367222	bayes_pls_golite062009
DNA binding	1.62328996594128	bayes_pls_golite062009
transcription repressor activity	1.56066397370123	bayes_pls_golite062009
protein binding	1.16541072642796	bayes_pls_golite062009
signal transducer activity	1.00684766673868	bayes_pls_golite062009
molecular transducer activity	1.00684766673868	bayes_pls_golite062009
transcription factor activity	0.687475481524107	bayes_pls_golite062009
catalytic activity	0.113112541746059	bayes_pls_golite062009
	0.0350881281129536	bayes_pls_golite062009

Predicted Domain #11

Region A:
Residues: [1083-1148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEVGAPTSSE EGDITMRLTY EPIDLSSILS DGEEKEVTKD TSNDSAKKEE ALDTAVKLIK  60
   61 ERIAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.045757
Match:	1j4wA_
Description:	Far upstream binding element, FBP, KH3 and KH4 domains
Matching Structure (courtesy of the PDB):

Predicted Domain #12

Region A:
Residues: [1149-1222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSATYAGYVW GADTRRFNMI VGPGGSNIKK IREAADVIIN VPRKSDKVND VVYIRGTKAG  60
   61 VEKAGEMVLK SLRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.045757
Match:	1j4wA_
Description:	Far upstream binding element, FBP, KH3 and KH4 domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

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Predicted functions:

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