YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|36784121, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36784121, gi|....

Description E-value Query
Range
Subject
Range
gi|56126775, gi|... - gi|56412518|ref|YP_149593.1| DL-methionine transporter substrate-binding subunit [Salmonella enteric...
gi|197361453, gi... - gi|197361453|ref|YP_002141089.1| DL-methionine transporter substrate-binding subunit [Salmonella ent...
229.0 [0..1] [271..1]

Back

Predicted Domain #1
Region A:
Residues: [1-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKLKTIAT ISALLGSLIL SGCGQEKQDP NHIKVGVIVG AEQEVAEIAK KVAKDKYGLD  60
   61 VELVTFNDFV LPNEALSKGD IDLNAYQHKP YMDQQIKDRG YKMVTVGNSF VYPIAGYSKK 120
  121 IKSLDELQDG SQIALPNDPT NLGRSLLLLQ KQGLIKLKDG IGLLPTVLDV VENPKNLKLV 180
  181 ELEAPQLPRS LDDQKIALAI INTTYASQIG LTPAKDGLFV EDKNSPYVNL LVSREDNKDA 240
  241 ENVKKFVKAY QSDEVDEAAN KIFNGGAVKG W

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.045757
Match: 1xs5A
Description: The Crystal Structure of Lipoprotein Tp32 from Treponema pallidum
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transporter activity 3.92658561501282 bayes_pls_golite062009
transmembrane transporter activity 3.71430307970333 bayes_pls_golite062009
amine transmembrane transporter activity 3.68263102620434 bayes_pls_golite062009
carboxylic acid transmembrane transporter activity 3.45855021324499 bayes_pls_golite062009
organic acid transmembrane transporter activity 3.44437031517765 bayes_pls_golite062009
substrate-specific transporter activity 3.34421502810243 bayes_pls_golite062009
primary active transmembrane transporter activity 3.33883206510679 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 3.33572158012752 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 3.31947078781945 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 3.3164655425684 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 3.3159417475856 bayes_pls_golite062009
active transmembrane transporter activity 3.25041295044206 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.76254706952599 bayes_pls_golite062009
ATPase activity, coupled 2.65558937563899 bayes_pls_golite062009
amino acid transmembrane transporter activity 2.47628874886983 bayes_pls_golite062009
amine binding 2.4097403582482 bayes_pls_golite062009
ATPase activity 2.40029628345531 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.3103850882599 bayes_pls_golite062009
pyrophosphatase activity 2.2348608319417 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.21542452486366 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.21260159167253 bayes_pls_golite062009
sulfur amino acid transmembrane transporter activity 2.14594454285001 bayes_pls_golite062009
ion transmembrane transporter activity 1.84929214408108 bayes_pls_golite062009
D-methionine transmembrane transporter activity 1.72463508462925 bayes_pls_golite062009
methionine transmembrane transporter activity 1.72463508462925 bayes_pls_golite062009
amino acid-transporting ATPase activity 1.65232476690022 bayes_pls_golite062009
amine-transporting ATPase activity 1.59812090922796 bayes_pls_golite062009
binding 1.54172013140566 bayes_pls_golite062009
amino acid binding 1.18820874048991 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 0.88623763826001 bayes_pls_golite062009
hydrolase activity 0.825775589802563 bayes_pls_golite062009
anion transmembrane transporter activity 0.75669016367838 bayes_pls_golite062009
polyamine transmembrane transporter activity 0.621740283439039 bayes_pls_golite062009
inorganic anion transmembrane transporter activity 0.555351218220589 bayes_pls_golite062009
polyamine-transporting ATPase activity 0.436507323554782 bayes_pls_golite062009
cation transmembrane transporter activity 0.343508026849565 bayes_pls_golite062009
L-amino acid transmembrane transporter activity 0.29299124929094 bayes_pls_golite062009
anion transmembrane-transporting ATPase activity 0.149393758153546 bayes_pls_golite062009
metal ion transmembrane transporter activity 0.0237973852493387 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle