Protein: | gi|190405354 |
Organism: | Saccharomyces cerevisiae RM11-1a |
Length: | 231 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405354.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..231] | [1..231] |
|
5.0E-27 | [1..61] | [1..61] |
|
1.0E-26 | [1..61] | [1..61] |
|
4.0E-26 | [1..61] | [1..61] |
|
1.0E-25 | [1..61] | [1..61] |
|
1.0E-25 | [1..61] | [1..61] |
|
5.0E-23 | [1..60] | [1..62] |
|
9.0E-21 | [1..59] | [1..63] |
|
2.0E-20 | [1..57] | [1..57] |
Region A: Residues: [1-69] |
1 11 21 31 41 51 | | | | | | 1 MTRYYCEYCH SYLTHDTLSV RKSHLVGKNH LRITADYYRN KARDIINKHN HKRRHIGKRG 60 61 RKERENSSQ |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.290 | 0.120 | commitment complex | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.299 | 0.071 | commitment complex | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.508 | 0.070 | commitment complex | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
View | Download | 0.382 | 0.045 | commitment complex | a.64.1 | Saposin |
View | Download | 0.299 | 0.012 | commitment complex | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
View | Download | 0.285 | N/A | N/A | d.47.1 | Ribosomal protein L11, N-terminal domain |
View | Download | 0.277 | N/A | N/A | a.4.1 | Homeodomain-like |
View | Download | 0.264 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.224 | N/A | N/A | d.50.3 | PI-Pfui intein middle domain |
View | Download | 0.218 | N/A | N/A | a.22.1 | Histone-fold |
View | Download | 0.212 | N/A | N/A | a.153.1 | Nuclear receptor coactivator interlocking domain |
View | Download | 0.211 | N/A | N/A | a.64.1 | Saposin |
View | Download | 0.210 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
View | Download | 0.209 | N/A | N/A | a.64.1 | Saposin |
Term | Confidence | Notes |
U1 snRNA binding | 4.35911393951689 | bayes_pls_golite062009 |
transcription regulator activity | 3.60566283434269 | bayes_pls_golite062009 |
DNA binding | 3.55661236227495 | bayes_pls_golite062009 |
nucleic acid binding | 3.48507500696529 | bayes_pls_golite062009 |
snRNA binding | 3.38579636849163 | bayes_pls_golite062009 |
RNA binding | 3.1651307444578 | bayes_pls_golite062009 |
transcription factor activity | 2.66585743129629 | bayes_pls_golite062009 |
binding | 2.51459778938853 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 1.8286807075508 | bayes_pls_golite062009 |
transcription activator activity | 1.42518458564872 | bayes_pls_golite062009 |
mRNA binding | 1.30742677372942 | bayes_pls_golite062009 |
chromatin binding | 0.89589330553881 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.8936929860974 | bayes_pls_golite062009 |
transcription repressor activity | 0.882178479686399 | bayes_pls_golite062009 |
transcription factor binding | 0.67452735768188 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 0.47352407708364 | bayes_pls_golite062009 |
protein binding | 0.308413944574415 | bayes_pls_golite062009 |
transcription cofactor activity | 0.26487559807277 | bayes_pls_golite062009 |
catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.240825841910931 | bayes_pls_golite062009 |
double-stranded DNA binding | 0.0129353639725593 | bayes_pls_golite062009 |
Region A: Residues: [70-231] |
1 11 21 31 41 51 | | | | | | 1 NETLKVTCLS NKEKRHIMHV KKMNQKELAQ TSIDTLKLLY DGSPGYSKVF VDANRFDIGD 60 61 LVKASKLPQR ANEKSAHHSF KQTSRSRDET CESNPFPRLN NPKKLEPPKI LSQWSNTIPK 120 121 TSIFYSVDIL QTTIKESKKR MHSDGIRKPS SANGYKRRRY GN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.