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Protein Overview: RU1C_RAT

General Information:
Name(s) found: RU1C_RAT [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • U1 small nuclear ribonucleoprotein C OS=Rattus norvegicus GN=Snrpc PE=3 SV=1 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 159 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Cajal body [UNKNOWN]
    cellular_component [ND]
    U1 snRNP [UNKNOWN]
    Biological Process: biological_process [ND]
    spliceosomal snRNP assembly [UNKNOWN]
    nuclear mRNA splicing, via spliceosome [UNKNOWN]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [UNKNOWN][IEA]
    protein binding [UNKNOWN]
    protein homodimerization activity [UNKNOWN]
    [NOT]U1 snRNA binding [UNKNOWN]
    single-stranded RNA binding [UNKNOWN]
    molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKFYCDYCD TYLTHDSPSV RKTHCSGRKH KENVKDYYQK WMEEQAQSLI DKTTAAFQQG  60
   61 KIPPAPFSAP PPAGAMIPPP PSLPGPPRPG MMPAPHMGGP PMMPMMGPPP PGMMPVGPAP 120
  121 GMRPPMGGHM PMMPGPPMMR PPARPMMVPT RPGMTRPDR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..61] PSI-BLAST 31.30103 The structure of the zinc finger from the human spliceosomal protein U1C
    2 View Details [62..159] FFAS03 1.28 Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.414217765611205 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle