| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.673147320613] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear chromosome, telomeric region | 1.2783E-5 | 2 | 23 | 2 | 6292 |
| chromosome, telomeric region | 1.7735E-5 | 2 | 27 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| nuclear telomeric heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
| telomeric heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
| nuclear heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
| heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA recombination | 3.2544E-4 | 2 | 114 | 2 | 6292 |
| telomere localization | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| meiotic telomere clustering | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| double-strand break repair via break-induced replication | 2.859E-3 | 2 | 9 | 1 | 6292 |
| chromosome organization involved in meiosis | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| synapsis | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| double-strand break repair via homologous recombination | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| double-strand break repair via nonhomologous end joining | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| recombinational repair | 8.248E-3 | 2 | 26 | 1 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
| damaged DNA binding | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| telomeric DNA binding | 3.811E-3 | 2 | 12 | 1 | 6292 |