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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.879186636395]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Set1C/COMPASS complex 1.4147E-6 2 8 2 6292
methyltransferase complex 1.4147E-6 2 8 2 6292
histone methyltransferase complex 1.4147E-6 2 8 2 6292
chromatin remodeling complex 2.4511E-4 2 99 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
mRNA cleavage and polyadenylation specificity factor complex 4.7627E-3 2 15 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292
mRNA cleavage factor complex 6.3477E-3 2 20 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone methylation 9.6001E-6 2 20 2 6292
protein amino acid alkylation 1.3945E-5 2 24 2 6292
protein amino acid methylation 1.3945E-5 2 24 2 6292
macromolecule methylation 4.5626E-5 2 43 2 6292
methylation 4.5626E-5 2 43 2 6292
one-carbon metabolic process 7.5032E-5 2 55 2 6292
covalent chromatin modification 1.9342E-4 2 88 2 6292
histone modification 1.9342E-4 2 88 2 6292
chromatin modification 7.0879E-4 2 168 2 6292
chromatin organization 1.036E-3 2 203 2 6292
snoRNA 3'-end processing 1.5888E-3 2 5 1 6292
snoRNA processing 2.224E-3 2 7 1 6292
termination of RNA polymerase II transcription, poly(A)-independent 2.859E-3 2 9 1 6292
termination of RNA polymerase II transcription, poly(A)-coupled 3.1764E-3 2 10 1 6292
post-translational protein modification 3.2108E-3 2 357 2 6292
ncRNA 3'-end processing 3.811E-3 2 12 1 6292
snoRNA metabolic process 5.7138E-3 2 18 1 6292
termination of RNA polymerase II transcription 6.0308E-3 2 19 1 6292
protein modification process 6.278E-3 2 499 2 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
transcription termination 6.6645E-3 2 21 1 6292
transcription 7.6839E-3 2 552 2 6292
chromosome organization 7.7677E-3 2 555 2 6292
macromolecule modification 8.1649E-3 2 569 2 6292
mRNA 3'-end processing 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone methyltransferase activity (H3-K4 specific) 1.4147E-6 2 8 2 6292
histone methyltransferase activity 1.819E-6 2 9 2 6292
histone-lysine N-methyltransferase activity 1.819E-6 2 9 2 6292
lysine N-methyltransferase activity 3.9411E-6 2 13 2 6292
protein-lysine N-methyltransferase activity 3.9411E-6 2 13 2 6292
protein methyltransferase activity 9.6001E-6 2 20 2 6292
N-methyltransferase activity 1.5158E-5 2 25 2 6292
S-adenosylmethionine-dependent methyltransferase activity 1.1171E-4 2 67 2 6292
methyltransferase activity 2.304E-4 2 96 2 6292
transferase activity, transferring one-carbon groups 2.4511E-4 2 99 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle