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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.917553030918]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromosomal part 1.413E-3 2 237 2 6292
chromosome 1.8898E-3 2 274 2 6292
DASH complex 3.811E-3 2 12 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of organelle organization 6.6999E-5 2 52 2 6292
regulation of cellular component organization 1.4021E-4 2 75 2 6292
regulation of histone methylation 3.1786E-4 2 1 1 6292
negative regulation of histone methylation 3.1786E-4 2 1 1 6292
negative regulation of histone modification 3.1786E-4 2 1 1 6292
regulation of histone modification 3.1786E-4 2 1 1 6292
negative regulation of histone H3-K36 methylation 3.1786E-4 2 1 1 6292
regulation of histone H3-K36 methylation 3.1786E-4 2 1 1 6292
protein peptidyl-prolyl isomerization 3.1786E-4 2 1 1 6292
histone peptidyl-prolyl isomerization 3.1786E-4 2 1 1 6292
histone H3-K36 methylation 3.1786E-4 2 1 1 6292
histone lysine methylation 6.3568E-4 2 2 1 6292
regulation of chromosome organization 6.3568E-4 2 2 1 6292
negative regulation of protein modification process 1.2712E-3 2 4 1 6292
regulation of protein modification process 2.224E-3 2 7 1 6292
negative regulation of cellular protein metabolic process 4.7627E-3 2 15 1 6292
negative regulation of protein metabolic process 5.0798E-3 2 16 1 6292
nucleosome assembly 5.0798E-3 2 16 1 6292
regulation of microtubule polymerization or depolymerization 5.3968E-3 2 17 1 6292
regulation of microtubule cytoskeleton organization 5.3968E-3 2 17 1 6292
regulation of microtubule-based process 5.3968E-3 2 17 1 6292
chromatin silencing at rDNA 5.7138E-3 2 18 1 6292
microtubule polymerization or depolymerization 5.7138E-3 2 18 1 6292
chromatin assembly 6.0308E-3 2 19 1 6292
regulation of cytoskeleton organization 6.3477E-3 2 20 1 6292
histone methylation 6.3477E-3 2 20 1 6292
protein amino acid alkylation 7.6148E-3 2 24 1 6292
protein amino acid methylation 7.6148E-3 2 24 1 6292
mitotic spindle organization in nucleus 8.248E-3 2 26 1 6292
negative regulation of cellular component organization 9.1975E-3 2 29 1 6292
nucleosome organization 9.1975E-3 2 29 1 6292
negative regulation of organelle organization 9.1975E-3 2 29 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

peptidyl-prolyl cis-trans isomerase activity 4.4455E-3 2 14 1 6292
cis-trans isomerase activity 4.4455E-3 2 14 1 6292
histone binding 4.4455E-3 2 14 1 6292
protein binding 9.4468E-3 2 612 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle