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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.946020351092]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA recombinase assembly 7.579E-7 2 6 2 6292
meiotic DNA recombinase assembly 7.579E-7 2 6 2 6292
heteroduplex formation 7.579E-7 2 6 2 6292
double-strand break repair via synthesis-dependent strand annealing 1.0611E-6 2 7 2 6292
double-strand break repair via single-strand annealing 1.819E-6 2 9 2 6292
double-strand break repair via homologous recombination 1.1672E-5 2 22 2 6292
recombinational repair 1.6421E-5 2 26 2 6292
non-recombinational repair 2.8346E-5 2 34 2 6292
protein-DNA complex assembly 3.744E-5 2 39 2 6292
double-strand break repair 8.0641E-5 2 57 2 6292
meiosis I 1.5567E-4 2 79 2 6292
DNA recombination 3.2544E-4 2 114 2 6292
M phase of meiotic cell cycle 6.427E-4 2 160 2 6292
meiosis 6.427E-4 2 160 2 6292
meiotic cell cycle 6.7534E-4 2 164 2 6292
cellular macromolecular complex assembly 8.3223E-4 2 182 2 6292
DNA repair 9.2646E-4 2 192 2 6292
response to DNA damage stimulus 1.4011E-3 2 236 2 6292
cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
macromolecular complex assembly 1.9877E-3 2 281 2 6292
cellular response to stress 2.1173E-3 2 290 2 6292
M phase 2.1762E-3 2 294 2 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
cell cycle phase 3.5621E-3 2 376 2 6292
cellular response to stimulus 3.6193E-3 2 379 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
telomere maintenance via recombination 5.0798E-3 2 16 1 6292
cell cycle process 6.0534E-3 2 490 2 6292
response to stress 6.2277E-3 2 497 2 6292
cell cycle 6.95E-3 2 525 2 6292
DNA metabolic process 8.631E-3 2 585 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein heterodimerization activity 3.0316E-7 2 4 2 6292
protein dimerization activity 7.579E-7 2 6 2 6292
DNA-dependent ATPase activity 7.5032E-5 2 55 2 6292
ATPase activity, coupled 5.5711E-4 2 149 2 6292
ATPase activity 1.1194E-3 2 211 2 6292
nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
pyrophosphatase activity 3.1391E-3 2 353 2 6292
protein binding 9.4468E-3 2 612 2 6292

YRC Informatics Platform - Version 3.0
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