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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.00594943548]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
RHO1
  • peroxisome
  • cellular bud tip
  • cellular bud neck
  • mitochondrion
  • mating projection tip
  • 1,3-beta-glucan synthase complex
  • mitochondrial outer membrane
    		•
  • small GTPase mediated signal transduction
  • regulation of cell size
  • cellular cell wall organization
  • actin filament organization
  • endocytosis
  • budding cell bud growth
    		•
  • GTPase activity
  • signal transducer activity
    		•
    SEC4
  • incipient cellular bud site
  • mitochondrion
  • vesicle
  • transport vesicle
  • mitochondrial outer membrane
  • actin cap
    		•
  • vesicle fusion
  • bipolar cellular bud site selection
  • small GTPase mediated signal transduction
  • Golgi to plasma membrane transport
  • ascospore-type prospore formation
  • cytokinesis
  • exocytosis
  • membrane addition at site of cytokinesis
    		•
  • GTPase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    mitochondrial outer membrane 2.1151E-4 2 92 2 6292
    outer membrane 7.9595E-4 2 178 2 6292
    organelle outer membrane 7.9595E-4 2 178 2 6292
    1,3-beta-glucan synthase complex 9.5344E-4 2 3 1 6292
    mitochondrial membrane 1.7808E-3 2 266 2 6292
    mitochondrial envelope 2.4514E-3 2 312 2 6292
    actin cap 3.811E-3 2 12 1 6292
    mitochondrial part 5.6881E-3 2 475 2 6292
    envelope 6.43E-3 2 505 2 6292
    organelle envelope 6.43E-3 2 505 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    small GTPase mediated signal transduction 1.0186E-4 2 64 2 6292
    asexual reproduction 2.0236E-4 2 90 2 6292
    cell budding 2.0236E-4 2 90 2 6292
    intracellular signal transduction 3.312E-4 2 115 2 6292
    intracellular signaling pathway 5.2022E-4 2 144 2 6292
    cell division 5.275E-4 2 145 2 6292
    membrane addition at site of cytokinesis 6.3568E-4 2 2 1 6292
    signaling pathway 8.5067E-4 2 184 2 6292
    cellular membrane organization 9.8542E-4 2 198 2 6292
    membrane organization 9.8542E-4 2 198 2 6292
    signal transduction 1.1516E-3 2 214 2 6292
    signal transmission 1.1841E-3 2 217 2 6292
    signaling process 1.1841E-3 2 217 2 6292
    reproduction of a single-celled organism 1.1841E-3 2 217 2 6292
    ascospore-type prospore formation 1.2712E-3 2 4 1 6292
    signaling 1.598E-3 2 252 2 6292
    reproduction 2.7096E-3 2 328 2 6292
    vesicle-mediated transport 2.9119E-3 2 340 2 6292
    vesicle fusion 9.1975E-3 2 29 1 6292
    Golgi to plasma membrane transport 9.8303E-3 2 31 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    GTPase activity 9.2464E-5 2 61 2 6292
    nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
    hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
    pyrophosphatase activity 3.1391E-3 2 353 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle