| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.057] [SVM Score: 0.397450183408] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| RCL1 |
|
|
|
| TIF6 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear outer membrane | 1.8468E-4 | 2 | 86 | 2 | 6292 |
| nuclear membrane | 2.3525E-4 | 2 | 97 | 2 | 6292 |
| outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| organelle outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| nuclear envelope | 9.9543E-4 | 2 | 199 | 2 | 6292 |
| nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ribosome biogenesis | 3.0157E-3 | 2 | 346 | 2 | 6292 |
| ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
| processing of 27S pre-rRNA | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| ribosomal subunit export from nucleus | 8.248E-3 | 2 | 26 | 1 | 6292 |
| establishment of ribosome localization | 8.248E-3 | 2 | 26 | 1 | 6292 |
| ribosome localization | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA-3'-phosphate cyclase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| ribosomal large subunit binding | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| cyclase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| ligase activity, forming phosphoric ester bonds | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| ribonucleoprotein binding | 2.224E-3 | 2 | 7 | 1 | 6292 |