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View Protein Complex Details

Complex Overview

From Publication: Gavin A.C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.
Notes: From the published set of protein complexes (core proteins only)
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear outer membrane 9.7674E-6 4 86 3 6292
nuclear membrane 1.4053E-5 4 97 3 6292
outer membrane 8.7226E-5 4 178 3 6292
organelle outer membrane 8.7226E-5 4 178 3 6292
nuclear envelope 1.2179E-4 4 199 3 6292
nuclear membrane-endoplasmic reticulum network 1.9262E-4 4 232 3 6292
small nucleolar ribonucleoprotein complex 7.6343E-4 4 72 2 6292
endomembrane system 9.5789E-4 4 398 3 6292
envelope 1.9337E-3 4 505 3 6292
organelle envelope 1.9337E-3 4 505 3 6292
membrane part 4.2752E-3 4 662 3 6292
organelle membrane 4.8652E-3 4 692 3 6292
nucleolus 6.4227E-3 4 211 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 8.9951E-6 4 346 4 6292
ribonucleoprotein complex biogenesis 1.2296E-5 4 374 4 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.3591E-5 4 13 2 6292
rRNA processing 3.2416E-5 4 128 3 6292
rRNA metabolic process 3.9765E-5 4 137 3 6292
cellular component biogenesis 1.4687E-4 4 694 4 6292
ncRNA processing 1.5347E-4 4 215 3 6292
ncRNA metabolic process 2.6137E-4 4 257 3 6292
maturation of SSU-rRNA 5.1246E-4 4 59 2 6292
small-subunit processome assembly 6.3573E-4 4 1 1 6292
RNA processing 8.3529E-4 4 380 3 6292
ncRNA 5'-end processing 1.9063E-3 4 3 1 6292
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.9063E-3 4 3 1 6292
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.9063E-3 4 3 1 6292
rRNA 5'-end processing 1.9063E-3 4 3 1 6292
RNA 5'-end processing 1.9063E-3 4 3 1 6292
maturation of 5.8S rRNA 2.5411E-3 4 4 1 6292
cleavage involved in rRNA processing 2.5411E-3 4 4 1 6292
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.5411E-3 4 4 1 6292
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.5411E-3 4 4 1 6292
endonucleolytic cleavage involved in rRNA processing 2.5411E-3 4 4 1 6292
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.5411E-3 4 4 1 6292
nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292
ribosomal small subunit assembly 8.8726E-3 4 14 1 6292
regulation of DNA replication 9.5041E-3 4 15 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 4.3185E-7 4 31 3 6292
RNA binding 7.5347E-4 4 367 3 6292
rRNA primary transcript binding 3.1756E-3 4 5 1 6292
nucleic acid binding 4.351E-3 4 666 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle