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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear outer membrane 9.7674E-6 4 86 3 6292
nuclear membrane 1.4053E-5 4 97 3 6292
outer membrane 8.7226E-5 4 178 3 6292
organelle outer membrane 8.7226E-5 4 178 3 6292
nuclear envelope 1.2179E-4 4 199 3 6292
nucleolus 1.4509E-4 4 211 3 6292
nuclear membrane-endoplasmic reticulum network 1.9262E-4 4 232 3 6292
small nucleolar ribonucleoprotein complex 7.6343E-4 4 72 2 6292
endomembrane system 9.5789E-4 4 398 3 6292
nuclear lumen 1.404E-3 4 453 3 6292
envelope 1.9337E-3 4 505 3 6292
organelle envelope 1.9337E-3 4 505 3 6292
organelle lumen 4.2376E-3 4 660 3 6292
intracellular organelle lumen 4.2376E-3 4 660 3 6292
membrane part 4.2752E-3 4 662 3 6292
organelle membrane 4.8652E-3 4 692 3 6292
membrane-enclosed lumen 5.0309E-3 4 700 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 1.6351E-7 4 128 4 6292
rRNA metabolic process 2.1526E-7 4 137 4 6292
ncRNA processing 1.3269E-6 4 215 4 6292
ncRNA metabolic process 2.7215E-6 4 257 4 6292
maturation of SSU-rRNA 3.1128E-6 4 59 3 6292
ribosome biogenesis 8.9951E-6 4 346 4 6292
ribonucleoprotein complex biogenesis 1.2296E-5 4 374 4 6292
RNA processing 1.3107E-5 4 380 4 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.3591E-5 4 13 2 6292
cellular component biogenesis 1.4687E-4 4 694 4 6292
RNA metabolic process 5.2568E-4 4 954 4 6292
ribosome assembly 6.0317E-4 4 64 2 6292
small-subunit processome assembly 6.3573E-4 4 1 1 6292
organelle assembly 7.0115E-4 4 69 2 6292
ribonucleoprotein complex assembly 1.2449E-3 4 92 2 6292
gene expression 1.7224E-3 4 1283 4 6292
ncRNA 5'-end processing 1.9063E-3 4 3 1 6292
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.9063E-3 4 3 1 6292
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.9063E-3 4 3 1 6292
rRNA 5'-end processing 1.9063E-3 4 3 1 6292
RNA 5'-end processing 1.9063E-3 4 3 1 6292
maturation of 5.8S rRNA 2.5411E-3 4 4 1 6292
cleavage involved in rRNA processing 2.5411E-3 4 4 1 6292
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.5411E-3 4 4 1 6292
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.5411E-3 4 4 1 6292
endonucleolytic cleavage involved in rRNA processing 2.5411E-3 4 4 1 6292
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.5411E-3 4 4 1 6292
nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
cellular macromolecular complex assembly 4.8049E-3 4 182 2 6292
cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292
ribosomal small subunit assembly 8.8726E-3 4 14 1 6292
cellular macromolecular complex subunit organization 9.5855E-3 4 259 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 4.3185E-7 4 31 3 6292
RNA binding 7.5347E-4 4 367 3 6292
binding 1.7823E-3 4 1294 4 6292
rRNA primary transcript binding 3.1756E-3 4 5 1 6292
nucleic acid binding 4.351E-3 4 666 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle