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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleoplasm 1.7541E-3 2 264 2 6292
nucleotide-excision repair factor 3 complex 2.224E-3 2 7 1 6292
holo TFIIH complex 3.1764E-3 2 10 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292
nucleotide-excision repair complex 6.6645E-3 2 21 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleotide-excision repair 3.552E-5 2 38 2 6292
DNA repair 9.2646E-4 2 192 2 6292
response to DNA damage stimulus 1.4011E-3 2 236 2 6292
nucleotide-excision repair, DNA duplex unwinding 1.9064E-3 2 6 1 6292
cellular response to stress 2.1173E-3 2 290 2 6292
negative regulation of transcription from RNA polymerase II promoter, mitotic 2.5415E-3 2 8 1 6292
regulation of transcription from RNA polymerase II promoter, mitotic 2.5415E-3 2 8 1 6292
transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
regulation of transcription, mitotic 2.859E-3 2 9 1 6292
negative regulation of transcription, mitotic 2.859E-3 2 9 1 6292
cellular response to stimulus 3.6193E-3 2 379 2 6292
response to stress 6.2277E-3 2 497 2 6292
DNA geometric change 6.3477E-3 2 20 1 6292
DNA duplex unwinding 6.3477E-3 2 20 1 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
methionine metabolic process 7.6148E-3 2 24 1 6292
transcription 7.6839E-3 2 552 2 6292
DNA metabolic process 8.631E-3 2 585 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA polymerase II transcription factor activity 4.2367E-4 2 130 2 6292
transcription regulator activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle