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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin accessibility complex 1.9063E-3 3 4 1 6292
nuclear part 5.3751E-3 3 1103 3 6292
DNA-directed RNA polymerase III complex 8.0849E-3 3 17 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA polymerase II transcriptional preinitiation complex assembly 4.768E-4 3 1 1 6292
regulation of RNA polymerase II transcriptional preinitiation complex assembly 4.768E-4 3 1 1 6292
transcription of nuclear rRNA large RNA polymerase I transcript 4.768E-4 3 1 1 6292
regulation of transcription initiation from RNA polymerase II promoter 4.768E-4 3 1 1 6292
transcriptional preinitiation complex assembly 4.768E-4 3 1 1 6292
transcription, DNA-dependent 5.081E-4 3 503 3 6292
RNA biosynthetic process 5.2344E-4 3 508 3 6292
transcription 6.7188E-4 3 552 3 6292
rRNA transcription 1.4299E-3 3 3 1 6292
nucleosome positioning 1.4299E-3 3 3 1 6292
negative regulation of transcription from RNA polymerase II promoter by pheromones 1.9063E-3 3 4 1 6292
negative regulation of gene-specific transcription from RNA polymerase II promoter 1.9063E-3 3 4 1 6292
negative regulation of gene-specific transcription 1.9063E-3 3 4 1 6292
negative regulation of transcription by pheromones 1.9063E-3 3 4 1 6292
RNA metabolic process 3.4763E-3 3 954 3 6292
regulation of transcription from RNA polymerase II promoter 3.8286E-3 3 228 2 6292
gene-specific transcription from RNA polymerase II promoter 4.7611E-3 3 10 1 6292
regulation of transcription by pheromones 4.7611E-3 3 10 1 6292
regulation of transcription from RNA polymerase II promoter by pheromones 4.7611E-3 3 10 1 6292
cellular response to pheromone 4.7611E-3 3 10 1 6292
regulation of gene-specific transcription from RNA polymerase II promoter 4.7611E-3 3 10 1 6292
cellular macromolecular complex subunit organization 4.9265E-3 3 259 2 6292
regulation of protein complex assembly 5.2364E-3 3 11 1 6292
cellular macromolecule biosynthetic process 6.7003E-3 3 1187 3 6292
macromolecule biosynthetic process 6.7343E-3 3 1189 3 6292
regulation of gene-specific transcription 7.136E-3 3 15 1 6292
transcription from RNA polymerase II promoter 8.1809E-3 3 335 2 6292
gene expression 8.4626E-3 3 1283 3 6292
regulation of cellular component biogenesis 8.5592E-3 3 18 1 6292
chromatin assembly 9.0332E-3 3 19 1 6292
macromolecular complex subunit organization 9.2699E-3 3 357 2 6292
regulation of transcription, DNA-dependent 9.321E-3 3 358 2 6292
cellular response to organic substance 9.5071E-3 3 20 1 6292
regulation of RNA metabolic process 9.5782E-3 3 363 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

TATA-binding protein binding 9.5344E-4 3 2 1 6292
ATPase activity 3.2839E-3 3 211 2 6292
rDNA binding 3.3344E-3 3 7 1 6292
nucleoside-triphosphatase activity 7.8952E-3 3 329 2 6292
hydrolase activity, acting on acid anhydrides 9.067E-3 3 353 2 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 9.067E-3 3 353 2 6292
pyrophosphatase activity 9.067E-3 3 353 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle