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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
AIR2
  • nucleus
  • TRAMP complex
    		•
  • mRNA export from nucleus
  • rRNA catabolic process
  • snRNA catabolic process
  • snoRNA catabolic process
  • tRNA catabolic process
  • ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process
    		•
  • polynucleotide adenylyltransferase activity
    		•
    MTR4
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • TRAMP complex
    		•
  • mRNA export from nucleus
  • rRNA catabolic process
  • ribosome biogenesis
  • tRNA catabolic process
  • ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process
  • polyadenylation-dependent ncRNA catabolic process
    		•
  • ATP-dependent RNA helicase activity
    		•
    PAP2
  • nucleus
  • TRAMP complex
    		•
  • mitotic chromosome condensation
  • ncRNA polyadenylation
  • mitotic sister chromatid cohesion
  • rRNA catabolic process
  • snRNA catabolic process
  • snoRNA catabolic process
  • tRNA catabolic process
  • DNA topological change
  • ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process
  • polyadenylation-dependent ncRNA catabolic process
    		•
  • DNA-directed DNA polymerase activity
  • polynucleotide adenylyltransferase activity
    		•
    PRP43
  • mitochondrion
  • spliceosomal complex
  • nuclear outer membrane
    		•
  • maturation of SSU-rRNA
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • rRNA processing
  • processing of 27S pre-rRNA
    		•
  • ATP-dependent RNA helicase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    TRAMP complex 3.8553E-10 4 4 3 6292
    nuclear part 9.4015E-4 4 1103 4 6292
    nuclear outer membrane 1.0884E-3 4 86 2 6292
    nuclear membrane 1.3833E-3 4 97 2 6292
    macromolecular complex 4.5471E-3 4 1635 4 6292
    outer membrane 4.5994E-3 4 178 2 6292
    organelle outer membrane 4.5994E-3 4 178 2 6292
    nuclear envelope 5.7261E-3 4 199 2 6292
    nuclear membrane-endoplasmic reticulum network 7.7328E-3 4 232 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    tRNA catabolic process 3.8553E-10 4 4 3 6292
    ncRNA polyadenylation 1.9272E-9 4 6 3 6292
    ncRNA catabolic process 1.9272E-9 4 6 3 6292
    ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process 1.9272E-9 4 6 3 6292
    rRNA catabolic process 1.9272E-9 4 6 3 6292
    polyadenylation-dependent RNA catabolic process 5.3949E-9 4 8 3 6292
    polyadenylation-dependent ncRNA catabolic process 5.3949E-9 4 8 3 6292
    ncRNA 3'-end processing 2.1184E-8 4 12 3 6292
    rRNA metabolic process 2.1526E-7 4 137 4 6292
    RNA polyadenylation 2.4994E-7 4 26 3 6292
    RNA 3'-end processing 1.1015E-6 4 42 3 6292
    ncRNA processing 1.3269E-6 4 215 4 6292
    ncRNA metabolic process 2.7215E-6 4 257 4 6292
    snRNA catabolic process 3.0297E-6 4 5 2 6292
    snoRNA catabolic process 3.0297E-6 4 5 2 6292
    RNA catabolic process 7.847E-6 4 80 3 6292
    snRNA metabolic process 1.0898E-5 4 9 2 6292
    RNA processing 1.3107E-5 4 380 4 6292
    tRNA metabolic process 2.6694E-5 4 120 3 6292
    snoRNA metabolic process 4.6226E-5 4 18 2 6292
    modification-dependent macromolecule catabolic process 6.8238E-5 4 164 3 6292
    cellular macromolecule catabolic process 2.8637E-4 4 265 3 6292
    macromolecule catabolic process 3.9009E-4 4 294 3 6292
    RNA metabolic process 5.2568E-4 4 954 4 6292
    mRNA export from nucleus 6.8098E-4 4 68 2 6292
    mRNA transport 6.8098E-4 4 68 2 6292
    RNA export from nucleus 9.4222E-4 4 80 2 6292
    RNA transport 9.6587E-4 4 81 2 6292
    nucleic acid transport 9.6587E-4 4 81 2 6292
    establishment of RNA localization 9.6587E-4 4 81 2 6292
    cellular catabolic process 1.084E-3 4 415 3 6292
    RNA localization 1.2449E-3 4 92 2 6292
    nucleobase, nucleoside, nucleotide and nucleic acid transport 1.355E-3 4 96 2 6292
    nuclear export 1.5586E-3 4 103 2 6292
    gene expression 1.7224E-3 4 1283 4 6292
    catabolic process 1.834E-3 4 496 3 6292
    nuclear transport 2.4736E-3 4 130 2 6292
    nucleocytoplasmic transport 2.4736E-3 4 130 2 6292
    nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
    DNA topological change 5.0773E-3 4 8 1 6292
    cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
    nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292
    mitotic chromosome condensation 6.9763E-3 4 11 1 6292
    chromosome condensation 8.2408E-3 4 13 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    polynucleotide adenylyltransferase activity 4.5436E-6 4 6 2 6292
    adenylyltransferase activity 2.3591E-5 4 13 2 6292
    ATP-dependent RNA helicase activity 1.1396E-4 4 28 2 6292
    RNA-dependent ATPase activity 1.2238E-4 4 29 2 6292
    RNA helicase activity 2.5881E-4 4 42 2 6292
    ATP-dependent helicase activity 3.3864E-4 4 48 2 6292
    purine NTP-dependent helicase activity 3.3864E-4 4 48 2 6292
    helicase activity 1.014E-3 4 83 2 6292
    ATPase activity, coupled 3.2394E-3 4 149 2 6292
    nucleotidyltransferase activity 4.1046E-3 4 168 2 6292
    ATPase activity 6.4227E-3 4 211 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle