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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
CHD1
  • transcription elongation factor complex
  • SLIK (SAGA-like) complex
  • mitochondrion
  • SAGA complex
  • chromatin remodeling
  • RNA elongation from RNA polymerase II promoter
  • ATPase activity
  • RNA polymerase II transcription elongation factor activity
  • CKA1
  • protein kinase CK2 complex
  • G2/M transition of mitotic cell cycle
  • G1/S transition of mitotic cell cycle
  • flocculation via cell wall protein-carbohydrate interaction
  • protein amino acid phosphorylation
  • response to DNA damage stimulus
  • regulation of transcription from RNA polymerase III promoter
  • regulation of transcription from RNA polymerase I promoter
  • cellular ion homeostasis
  • protein kinase CK2 activity
  • CKA2
  • protein kinase CK2 complex
  • G2/M transition of mitotic cell cycle
  • G1/S transition of mitotic cell cycle
  • flocculation via cell wall protein-carbohydrate interaction
  • protein amino acid phosphorylation
  • response to DNA damage stimulus
  • regulation of transcription from RNA polymerase III promoter
  • regulation of transcription from RNA polymerase I promoter
  • cellular ion homeostasis
  • protein kinase CK2 activity
  • CKB1
  • protein kinase CK2 complex
  • G2/M transition of mitotic cell cycle
  • G1/S transition of mitotic cell cycle
  • flocculation via cell wall protein-carbohydrate interaction
  • protein amino acid phosphorylation
  • response to DNA damage stimulus
  • regulation of transcription from RNA polymerase III promoter
  • regulation of transcription from RNA polymerase I promoter
  • cellular ion homeostasis
  • protein kinase CK2 regulator activity
  • CKB2
  • protein kinase CK2 complex
  • G2/M transition of mitotic cell cycle
  • G1/S transition of mitotic cell cycle
  • flocculation via cell wall protein-carbohydrate interaction
  • protein amino acid phosphorylation
  • response to DNA damage stimulus
  • regulation of transcription from RNA polymerase III promoter
  • regulation of transcription from RNA polymerase I promoter
  • cellular ion homeostasis
  • protein kinase CK2 regulator activity
  • UTP22
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    protein kinase CK2 complex 2.2991E-13 6 4 4 6292
    macromolecular complex 3.0579E-4 6 1635 6 6292
    protein complex 9.756E-4 6 1137 5 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    regulation of transcription from RNA polymerase I promoter 2.2991E-13 6 4 4 6292
    regulation of transcription from RNA polymerase III promoter 8.0408E-12 6 7 4 6292
    flocculation via cell wall protein-carbohydrate interaction 4.8208E-11 6 10 4 6292
    flocculation 7.5736E-11 6 11 4 6292
    G2/M transition of mitotic cell cycle 5.426E-9 6 29 4 6292
    transcription from RNA polymerase I promoter 6.2591E-9 6 30 4 6292
    transcription from RNA polymerase III promoter 1.6824E-8 6 38 4 6292
    G1/S transition of mitotic cell cycle 5.2331E-8 6 50 4 6292
    interphase of mitotic cell cycle 7.7787E-7 6 97 4 6292
    interphase 7.7787E-7 6 97 4 6292
    protein amino acid phosphorylation 9.9106E-7 6 103 4 6292
    cellular chemical homeostasis 1.7727E-6 6 119 4 6292
    cellular ion homeostasis 1.7727E-6 6 119 4 6292
    cellular homeostasis 1.8333E-6 6 120 4 6292
    chemical homeostasis 2.0246E-6 6 123 4 6292
    ion homeostasis 2.0246E-6 6 123 4 6292
    multi-organism process 3.7053E-6 6 143 4 6292
    phosphorylation 9.0899E-6 6 179 4 6292
    RNA metabolic process 1.1988E-5 6 954 6 6292
    transcription, DNA-dependent 1.7965E-5 6 503 5 6292
    RNA biosynthetic process 1.8866E-5 6 508 5 6292
    phosphorus metabolic process 2.4213E-5 6 229 4 6292
    phosphate metabolic process 2.4213E-5 6 229 4 6292
    response to DNA damage stimulus 2.7283E-5 6 236 4 6292
    transcription 2.8446E-5 6 552 5 6292
    mitotic cell cycle 3.7074E-5 6 255 4 6292
    cellular response to stress 6.1624E-5 6 290 4 6292
    gene expression 7.1216E-5 6 1283 6 6292
    nucleic acid metabolic process 1.283E-4 6 1415 6 6292
    post-translational protein modification 1.3958E-4 6 357 4 6292
    regulation of transcription, DNA-dependent 1.4112E-4 6 358 4 6292
    regulation of RNA metabolic process 1.4901E-4 6 363 4 6292
    cell cycle phase 1.7103E-4 6 376 4 6292
    cellular response to stimulus 1.7644E-4 6 379 4 6292
    regulation of transcription 1.8573E-4 6 384 4 6292
    homeostatic process 2.354E-4 6 408 4 6292
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.3599E-4 6 1566 6 6292
    regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.5156E-4 6 415 4 6292
    regulation of nitrogen compound metabolic process 2.5394E-4 6 416 4 6292
    regulation of gene expression 3.3024E-4 6 445 4 6292
    regulation of macromolecule biosynthetic process 3.6316E-4 6 456 4 6292
    regulation of cellular biosynthetic process 4.1527E-4 6 472 4 6292
    regulation of biosynthetic process 4.187E-4 6 473 4 6292
    regulation of macromolecule metabolic process 4.7266E-4 6 488 4 6292
    cell cycle process 4.8022E-4 6 490 4 6292
    cellular nitrogen compound metabolic process 4.9256E-4 6 1770 6 6292
    response to stress 5.0738E-4 6 497 4 6292
    protein modification process 5.1534E-4 6 499 4 6292
    nitrogen compound metabolic process 5.2873E-4 6 1791 6 6292
    regulation of primary metabolic process 5.7801E-4 6 514 4 6292
    cell cycle 6.2738E-4 6 525 4 6292
    regulation of cellular metabolic process 6.7976E-4 6 536 4 6292
    regulation of metabolic process 7.3526E-4 6 547 4 6292
    regulation of biological quality 7.5624E-4 6 551 4 6292
    macromolecule modification 8.5609E-4 6 569 4 6292
    cellular macromolecule biosynthetic process 1.2008E-3 6 1187 5 6292
    macromolecule biosynthetic process 1.2106E-3 6 1189 5 6292
    cellular macromolecule metabolic process 2.2844E-3 6 2285 6 6292
    response to stimulus 2.6699E-3 6 766 4 6292
    macromolecule metabolic process 2.6967E-3 6 2349 6 6292
    regulation of cellular process 3.0881E-3 6 796 4 6292
    regulation of biological process 3.5191E-3 6 824 4 6292
    cellular biosynthetic process 4.5365E-3 6 1567 5 6292
    biosynthetic process 5.0373E-3 6 1602 5 6292
    cellular protein metabolic process 9.4683E-3 6 1074 4 6292
    primary metabolic process 9.4808E-3 6 2896 6 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    obsolete_molecular_function 1.9549E-7 6 69 4 6292
    protein kinase CK2 activity 7.579E-7 6 2 2 6292
    protein kinase CK2 regulator activity 7.579E-7 6 2 2 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle