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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
HHO1
  • nucleus
  • nuclear nucleosome
    		•
  • regulation of transcription, DNA-dependent
  • negative regulation of DNA recombination
    		•
  • DNA binding
    		•
    NHP6A
  • nuclear chromatin
    		•
  • chromatin remodeling
  • chromatin organization
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of transcription from RNA polymerase III promoter
  • regulation of transcription from RNA polymerase II promoter
    		•
  • chromatin binding
    		•
    RPL32
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
    		•
  • translation
    		•
  • structural constituent of ribosome
    		•
    RPL6A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
    		•
  • ribosomal large subunit assembly
  • translation
    		•
  • RNA binding
  • structural constituent of ribosome
    		•
    RPS16B, RPS16A
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • ribosome
  • 90S preribosome
  • intracellular
    		•
  • regulation of translation
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosomal small subunit biogenesis
  • translation
    		•
  • structural constituent of ribosome
    		•
    RPS17B
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • ribosome
  • intracellular
    		•
  • telomere maintenance
  • ribosomal small subunit assembly
  • translation
    		•
  • structural constituent of ribosome
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    cytosolic ribosome 9.1569E-7 6 101 4 6292
    cytosolic part 1.9592E-6 6 122 4 6292
    ribosomal subunit 9.9271E-6 6 183 4 6292
    non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
    intracellular non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
    cytosol 5.6745E-5 6 284 4 6292
    ribosome 6.1624E-5 6 290 4 6292
    cytosolic small ribosomal subunit 5.2472E-4 6 38 2 6292
    ribonucleoprotein complex 5.7801E-4 6 514 4 6292
    cytosolic large ribosomal subunit 1.3088E-3 6 60 2 6292
    nuclear chromatin 1.9326E-3 6 73 2 6292
    small ribosomal subunit 1.9326E-3 6 73 2 6292
    chromatin 2.148E-3 6 77 2 6292
    organelle part 2.2664E-3 6 2282 6 6292
    intracellular organelle part 2.2664E-3 6 2282 6 6292
    large ribosomal subunit 4.3395E-3 6 110 2 6292
    macromolecular complex 5.5477E-3 6 1635 5 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    cellular macromolecule biosynthetic process 4.4618E-5 6 1187 6 6292
    macromolecule biosynthetic process 4.5072E-5 6 1189 6 6292
    gene expression 7.1216E-5 6 1283 6 6292
    translation 1.7103E-4 6 376 4 6292
    cellular biosynthetic process 2.3689E-4 6 1567 6 6292
    ribosomal small subunit biogenesis 2.4382E-4 6 26 2 6292
    biosynthetic process 2.7052E-4 6 1602 6 6292
    ribosomal subunit assembly 1.1004E-3 6 55 2 6292
    ribosome assembly 1.4882E-3 6 64 2 6292
    organelle assembly 1.7281E-3 6 69 2 6292
    cellular macromolecule metabolic process 2.2844E-3 6 2285 6 6292
    macromolecule metabolic process 2.6967E-3 6 2349 6 6292
    ribosome biogenesis 2.9111E-3 6 346 3 6292
    ribonucleoprotein complex assembly 3.0534E-3 6 92 2 6292
    ribonucleoprotein complex biogenesis 3.641E-3 6 374 3 6292
    regulation of gene expression 5.9803E-3 6 445 3 6292
    regulation of macromolecule biosynthetic process 6.4094E-3 6 456 3 6292
    regulation of transcription from RNA polymerase III promoter 6.6592E-3 6 7 1 6292
    regulation of cellular biosynthetic process 7.0671E-3 6 472 3 6292
    regulation of biosynthetic process 7.1095E-3 6 473 3 6292
    regulation of macromolecule metabolic process 7.7652E-3 6 488 3 6292
    regulation of primary metabolic process 8.9879E-3 6 514 3 6292
    cellular protein metabolic process 9.4683E-3 6 1074 4 6292
    primary metabolic process 9.4808E-3 6 2896 6 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    structural constituent of ribosome 1.7826E-5 6 212 4 6292
    structural molecule activity 1.1393E-4 6 339 4 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle