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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear outer membrane 2.3012E-8 8 86 5 6292
nuclear membrane 4.2397E-8 8 97 5 6292
outer membrane 8.9582E-7 8 178 5 6292
organelle outer membrane 8.9582E-7 8 178 5 6292
nuclear envelope 1.5606E-6 8 199 5 6292
nucleolus 2.0872E-6 8 211 5 6292
nuclear membrane-endoplasmic reticulum network 3.3401E-6 8 232 5 6292
ribonucleoprotein complex 7.018E-6 8 514 6 6292
preribosome 7.9274E-6 8 34 3 6292
non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
intracellular non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
endomembrane system 4.7184E-5 8 398 5 6292
small nucleolar ribonucleoprotein complex 7.7231E-5 8 72 3 6292
nuclear lumen 8.8346E-5 8 453 5 6292
envelope 1.4914E-4 8 505 5 6292
organelle envelope 1.4914E-4 8 505 5 6292
organelle lumen 5.3463E-4 8 660 5 6292
intracellular organelle lumen 5.3463E-4 8 660 5 6292
membrane part 5.4233E-4 8 662 5 6292
organelle membrane 6.6856E-4 8 692 5 6292
membrane-enclosed lumen 7.0576E-4 8 700 5 6292
macromolecular complex 5.1894E-3 8 1635 6 6292
nuclear part 5.7545E-3 8 1103 5 6292
small-subunit processome 7.6075E-3 8 6 1 6292
nuclear microtubule 7.6075E-3 8 6 1 6292
preribosome, small subunit precursor 7.6075E-3 8 6 1 6292
membrane 8.3295E-3 8 1198 5 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 1.7081E-9 8 128 6 6292
rRNA metabolic process 2.5819E-9 8 137 6 6292
ribosome biogenesis 1.094E-8 8 346 7 6292
ribonucleoprotein complex biogenesis 1.8872E-8 8 374 7 6292
ncRNA processing 3.9303E-8 8 215 6 6292
ncRNA metabolic process 1.1463E-7 8 257 6 6292
RNA processing 1.1789E-6 8 380 6 6292
cellular component biogenesis 1.3986E-6 8 694 7 6292
maturation of SSU-rRNA 4.2427E-5 8 59 3 6292
gene expression 9.518E-5 8 1283 7 6292
RNA metabolic process 2.5461E-4 8 954 6 6292
nucleic acid metabolic process 2.3473E-3 8 1415 6 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.1016E-3 8 1566 6 6292
cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
macromolecule metabolic process 5.4192E-3 8 2349 7 6292
cellular nitrogen compound metabolic process 7.9712E-3 8 1770 6 6292
nitrogen compound metabolic process 8.4927E-3 8 1791 6 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 6.4583E-4 8 31 2 6292
rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.2715E-3 8 1 1 6292
rRNA (adenine) methyltransferase activity 1.2715E-3 8 1 1 6292
rRNA methyltransferase activity 6.3431E-3 8 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle