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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 10 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
DIM1
  • nuclear outer membrane
  • nucleolus
  • rRNA modification
  • ribosome biogenesis
  • rRNA (adenine-N6,N6-)-dimethyltransferase activity
  • EMG1
  • nucleus
  • cytoplasm
  • nuclear microtubule
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • ribosomal small subunit biogenesis
  • ribosome biogenesis
  • molecular_function
  • IMP3
  • small-subunit processome
  • nuclear outer membrane
  • small nucleolar ribonucleoprotein complex
  • rRNA modification
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • MPP10
  • nucleus
  • small-subunit processome
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • molecular_function
  • PNO1
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • protein complex assembly
  • ribosome biogenesis
  • rRNA processing
  • unfolded protein binding
  • PWP2
  • cytoplasm
  • nuclear outer membrane
  • 90S preribosome
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • cytokinesis
  • ribosome biogenesis
  • snoRNA binding
  • RPS13
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • 90S preribosome
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • UTP10
  • mitochondrion
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • UTP4
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • UTP6
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    small nucleolar ribonucleoprotein complex 2.2281E-12 10 72 7 6292
    nuclear outer membrane 1.0991E-9 10 86 6 6292
    nuclear membrane 2.2962E-9 10 97 6 6292
    ribonucleoprotein complex 7.3162E-8 10 514 8 6292
    outer membrane 9.0127E-8 10 178 6 6292
    organelle outer membrane 9.0127E-8 10 178 6 6292
    preribosome 1.4589E-7 10 34 4 6292
    nuclear envelope 1.7551E-7 10 199 6 6292
    nuclear membrane-endoplasmic reticulum network 4.3733E-7 10 232 6 6292
    endomembrane system 1.0426E-5 10 398 6 6292
    small-subunit processome 3.399E-5 10 6 2 6292
    envelope 4.1226E-5 10 505 6 6292
    organelle envelope 4.1226E-5 10 505 6 6292
    membrane part 1.9209E-4 10 662 6 6292
    nucleolus 2.202E-4 10 211 4 6292
    organelle membrane 2.4641E-4 10 692 6 6292
    90S preribosome 3.0531E-4 10 17 2 6292
    macromolecular complex 5.4804E-4 10 1635 8 6292
    nuclear part 3.164E-3 10 1103 6 6292
    nuclear lumen 3.9246E-3 10 453 4 6292
    membrane 4.8944E-3 10 1198 6 6292
    nuclear microtubule 9.5019E-3 10 6 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    rRNA processing 1.025E-12 10 128 8 6292
    rRNA metabolic process 1.7872E-12 10 137 8 6292
    ribosome biogenesis 3.963E-11 10 346 9 6292
    ncRNA processing 6.9391E-11 10 215 8 6292
    ribonucleoprotein complex biogenesis 8.0128E-11 10 374 9 6292
    maturation of SSU-rRNA 1.0691E-10 10 59 6 6292
    ncRNA metabolic process 2.92E-10 10 257 8 6292
    RNA processing 6.6673E-9 10 380 8 6292
    cellular component biogenesis 2.0804E-8 10 694 9 6292
    gene expression 4.872E-6 10 1283 9 6292
    RNA metabolic process 9.1999E-6 10 954 8 6292
    nucleic acid metabolic process 1.8614E-4 10 1415 8 6292
    rRNA modification 3.4319E-4 10 18 2 6292
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.9771E-4 10 1566 8 6292
    cellular macromolecule metabolic process 7.3309E-4 10 2285 9 6292
    macromolecule metabolic process 9.2762E-4 10 2349 9 6292
    cellular nitrogen compound metabolic process 9.8474E-4 10 1770 8 6292
    nitrogen compound metabolic process 1.0739E-3 10 1791 8 6292
    RNA modification 5.1831E-3 10 70 2 6292
    primary metabolic process 5.4001E-3 10 2896 9 6292
    cellular metabolic process 7.9165E-3 10 3033 9 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    snoRNA binding 5.1292E-10 10 31 5 6292
    RNA binding 1.2975E-4 10 367 5 6292
    rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.5893E-3 10 1 1 6292
    rRNA (adenine) methyltransferase activity 1.5893E-3 10 1 1 6292
    nucleic acid binding 2.094E-3 10 666 5 6292
    binding 7.3119E-3 10 1294 6 6292
    rRNA methyltransferase activity 7.9239E-3 10 5 1 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle