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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 9 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 2.0098E-18 9 72 9 6292
ribonucleoprotein complex 1.5187E-10 9 514 9 6292
nuclear outer membrane 4.4449E-10 9 86 6 6292
nuclear membrane 9.3E-10 9 97 6 6292
outer membrane 3.6916E-8 9 178 6 6292
organelle outer membrane 3.6916E-8 9 178 6 6292
small-subunit processome 4.0399E-8 9 6 3 6292
nuclear envelope 7.2099E-8 9 199 6 6292
nuclear membrane-endoplasmic reticulum network 1.8049E-7 9 232 6 6292
endomembrane system 4.405E-6 9 398 6 6292
macromolecular complex 5.3146E-6 9 1635 9 6292
preribosome 1.1847E-5 9 34 3 6292
envelope 1.7689E-5 9 505 6 6292
organelle envelope 1.7689E-5 9 505 6 6292
membrane part 8.4337E-5 9 662 6 6292
organelle membrane 1.0867E-4 9 692 6 6292
nuclear part 1.4854E-3 9 1103 6 6292
membrane 2.3322E-3 9 1198 6 6292
nucleolus 2.6889E-3 9 211 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 1.5678E-13 9 59 7 6292
rRNA processing 2.0854E-13 9 128 8 6292
rRNA metabolic process 3.6409E-13 9 137 8 6292
ribosome biogenesis 4.164E-12 9 346 9 6292
ribonucleoprotein complex biogenesis 8.4549E-12 9 374 9 6292
ncRNA processing 1.4297E-11 9 215 8 6292
ncRNA metabolic process 6.0531E-11 9 257 8 6292
RNA processing 1.4075E-9 9 380 8 6292
cellular component biogenesis 2.3068E-9 9 694 9 6292
RNA metabolic process 2.1237E-6 9 954 8 6292
gene expression 2.1668E-5 9 1283 8 6292
nucleic acid metabolic process 4.6444E-5 9 1415 8 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.0193E-4 9 1566 8 6292
cellular nitrogen compound metabolic process 2.6198E-4 9 1770 8 6292
rRNA modification 2.7502E-4 9 18 2 6292
nitrogen compound metabolic process 2.8682E-4 9 1791 8 6292
cellular macromolecule metabolic process 1.8315E-3 9 2285 8 6292
macromolecule metabolic process 2.2547E-3 9 2349 8 6292
RNA modification 4.1764E-3 9 70 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 7.1205E-13 9 31 6 6292
RNA binding 7.0672E-8 9 367 7 6292
nucleic acid binding 4.2982E-6 9 666 7 6292
binding 3.7284E-4 9 1294 7 6292
rRNA primary transcript binding 7.1338E-3 9 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle