| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.495265847733] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| FACT complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| alpha DNA polymerase:primase complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
| nuclear replisome | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| replisome | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| nuclear replication fork | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| transcription elongation factor complex | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| nuclear chromosome, telomeric region | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| chromosome, telomeric region | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| loss of chromatin silencing | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| regulation of gene silencing | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| negative regulation of gene silencing | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| positive regulation of gene expression, epigenetic | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| regulation of chromatin silencing | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| negative regulation of chromatin silencing | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| transcription, DNA-dependent | 6.3792E-3 | 2 | 503 | 2 | 6292 |
| RNA biosynthetic process | 6.5067E-3 | 2 | 508 | 2 | 6292 |
| transcription | 7.6839E-3 | 2 | 552 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chromatin binding | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| chromatin insulator sequence binding | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| chromatin DNA binding | 2.5415E-3 | 2 | 8 | 1 | 6292 |