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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.525611855984]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
ROK1
  • nuclear outer membrane
  • nucleolus
    		•
  • snoRNA localization
  • ribosome biogenesis
  • rRNA processing
    		•
  • ATPase activity
  • ATP-dependent RNA helicase activity
    		•
    SPB4
  • nuclear outer membrane
  • nucleolus
    		•
  • ribosome biogenesis
  • ribosomal large subunit assembly
    		•
  • ATP-dependent RNA helicase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    nuclear outer membrane 1.8468E-4 2 86 2 6292
    nuclear membrane 2.3525E-4 2 97 2 6292
    outer membrane 7.9595E-4 2 178 2 6292
    organelle outer membrane 7.9595E-4 2 178 2 6292
    nuclear envelope 9.9543E-4 2 199 2 6292
    nucleolus 1.1194E-3 2 211 2 6292
    nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
    endomembrane system 3.9918E-3 2 398 2 6292
    nuclear lumen 5.1728E-3 2 453 2 6292
    envelope 6.43E-3 2 505 2 6292
    organelle envelope 6.43E-3 2 505 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    snoRNA localization 3.1786E-4 2 1 1 6292
    ribosome biogenesis 3.0157E-3 2 346 2 6292
    ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    ATP-dependent RNA helicase activity 1.9099E-5 2 28 2 6292
    RNA-dependent ATPase activity 2.0514E-5 2 29 2 6292
    RNA helicase activity 4.3504E-5 2 42 2 6292
    ATP-dependent helicase activity 5.6994E-5 2 48 2 6292
    purine NTP-dependent helicase activity 5.6994E-5 2 48 2 6292
    helicase activity 1.7194E-4 2 83 2 6292
    ATPase activity, coupled 5.5711E-4 2 149 2 6292
    ATPase activity 1.1194E-3 2 211 2 6292
    nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
    hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
    pyrophosphatase activity 3.1391E-3 2 353 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle