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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.541862238712]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mitochondrial membrane part 2.5011E-4 2 100 2 6292
mitochondrial inner membrane 7.6048E-4 2 174 2 6292
organelle inner membrane 8.5997E-4 2 185 2 6292
proton-transporting ATP synthase, central stalk 9.5344E-4 2 3 1 6292
mitochondrial proton-transporting ATP synthase, central stalk 9.5344E-4 2 3 1 6292
proton-transporting ATP synthase complex, catalytic core F(1) 1.5888E-3 2 5 1 6292
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) 1.5888E-3 2 5 1 6292
mitochondrial membrane 1.7808E-3 2 266 2 6292
mitochondrial envelope 2.4514E-3 2 312 2 6292
mitochondrial respiratory chain complex IV 3.811E-3 2 12 1 6292
respiratory chain complex IV 3.811E-3 2 12 1 6292
proton-transporting two-sector ATPase complex, catalytic domain 4.1283E-3 2 13 1 6292
mitochondrial part 5.6881E-3 2 475 2 6292
mitochondrial proton-transporting ATP synthase complex 6.3477E-3 2 20 1 6292
proton-transporting ATP synthase complex 6.3477E-3 2 20 1 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292
mitochondrial respiratory chain 8.248E-3 2 26 1 6292
respiratory chain 8.248E-3 2 26 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

oxidative phosphorylation 5.2295E-5 2 46 2 6292
phosphorylation 8.0494E-4 2 179 2 6292
generation of precursor metabolites and energy 9.5571E-4 2 195 2 6292
phosphorus metabolic process 1.3191E-3 2 229 2 6292
phosphate metabolic process 1.3191E-3 2 229 2 6292
mitochondrial electron transport, cytochrome c to oxygen 3.1764E-3 2 10 1 6292
ATP synthesis coupled proton transport 6.3477E-3 2 20 1 6292
energy coupled proton transport, down electrochemical gradient 6.3477E-3 2 20 1 6292
ATP metabolic process 6.3477E-3 2 20 1 6292
ATP biosynthetic process 6.3477E-3 2 20 1 6292
purine ribonucleoside triphosphate biosynthetic process 6.9813E-3 2 22 1 6292
purine nucleoside triphosphate biosynthetic process 6.9813E-3 2 22 1 6292
proton transport 7.6148E-3 2 24 1 6292
ribonucleoside triphosphate biosynthetic process 7.6148E-3 2 24 1 6292
hydrogen transport 7.6148E-3 2 24 1 6292
ATP synthesis coupled electron transport 7.9314E-3 2 25 1 6292
mitochondrial ATP synthesis coupled electron transport 7.9314E-3 2 25 1 6292
respiratory electron transport chain 7.9314E-3 2 25 1 6292
electron transport chain 7.9314E-3 2 25 1 6292
oxidation reduction 8.248E-3 2 26 1 6292
purine ribonucleoside triphosphate metabolic process 8.5646E-3 2 27 1 6292
purine nucleoside triphosphate metabolic process 8.5646E-3 2 27 1 6292
nucleoside triphosphate biosynthetic process 8.5646E-3 2 27 1 6292
ribonucleoside triphosphate metabolic process 9.1975E-3 2 29 1 6292
monovalent inorganic cation transport 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

hydrogen ion transmembrane transporter activity 7.2304E-5 2 54 2 6292
monovalent inorganic cation transmembrane transporter activity 8.6451E-5 2 59 2 6292
inorganic cation transmembrane transporter activity 2.5516E-4 2 101 2 6292
cation transmembrane transporter activity 3.4879E-4 2 118 2 6292
ion transmembrane transporter activity 5.3483E-4 2 146 2 6292
substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
transmembrane transporter activity 2.3578E-3 2 306 2 6292
substrate-specific transporter activity 2.8436E-3 2 336 2 6292
heme-copper terminal oxidase activity 3.811E-3 2 12 1 6292
cytochrome-c oxidase activity 3.811E-3 2 12 1 6292
oxidoreductase activity, acting on heme group of donors 3.811E-3 2 12 1 6292
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 3.811E-3 2 12 1 6292
transporter activity 4.1132E-3 2 404 2 6292
hydrogen ion transporting ATP synthase activity, rotational mechanism 4.7627E-3 2 15 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle