From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.588823029812] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
trans-Golgi network transport vesicle | 3.4937E-3 | 2 | 11 | 1 | 6292 |
trans-Golgi network | 4.1283E-3 | 2 | 13 | 1 | 6292 |
clathrin-coated vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
phospholipid translocation | 1.0611E-6 | 2 | 7 | 2 | 6292 |
lipid translocation | 1.0611E-6 | 2 | 7 | 2 | 6292 |
phospholipid transport | 3.3348E-6 | 2 | 12 | 2 | 6292 |
lipid transport | 3.3651E-5 | 2 | 37 | 2 | 6292 |
lipid localization | 3.744E-5 | 2 | 39 | 2 | 6292 |
membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
intracellular protein transport | 1.6363E-3 | 2 | 255 | 2 | 6292 |
protein transport | 1.8213E-3 | 2 | 269 | 2 | 6292 |
establishment of protein localization | 1.8485E-3 | 2 | 271 | 2 | 6292 |
cellular protein localization | 1.8898E-3 | 2 | 274 | 2 | 6292 |
cellular macromolecule localization | 2.0305E-3 | 2 | 284 | 2 | 6292 |
protein localization | 2.3118E-3 | 2 | 303 | 2 | 6292 |
macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.