From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.612738928044] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
meiotic mismatch repair | 1.819E-6 | 2 | 9 | 2 | 6292 |
mismatch repair | 1.7735E-5 | 2 | 27 | 2 | 6292 |
meiosis I | 1.5567E-4 | 2 | 79 | 2 | 6292 |
M phase of meiotic cell cycle | 6.427E-4 | 2 | 160 | 2 | 6292 |
meiosis | 6.427E-4 | 2 | 160 | 2 | 6292 |
meiotic cell cycle | 6.7534E-4 | 2 | 164 | 2 | 6292 |
DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
removal of nonhomologous ends | 1.5888E-3 | 2 | 5 | 1 | 6292 |
DNA catabolic process, endonucleolytic | 1.9064E-3 | 2 | 6 | 1 | 6292 |
cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
M phase | 2.1762E-3 | 2 | 294 | 2 | 6292 |
gene conversion at mating-type locus | 3.4937E-3 | 2 | 11 | 1 | 6292 |
cell cycle phase | 3.5621E-3 | 2 | 376 | 2 | 6292 |
cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
DNA catabolic process | 4.7627E-3 | 2 | 15 | 1 | 6292 |
mating type switching | 5.0798E-3 | 2 | 16 | 1 | 6292 |
cell cycle process | 6.0534E-3 | 2 | 490 | 2 | 6292 |
response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
mating type determination | 6.3477E-3 | 2 | 20 | 1 | 6292 |
sex determination | 6.3477E-3 | 2 | 20 | 1 | 6292 |
cell cycle | 6.95E-3 | 2 | 525 | 2 | 6292 |
cell fate commitment | 7.2981E-3 | 2 | 23 | 1 | 6292 |
DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mismatched DNA binding | 5.0527E-7 | 2 | 5 | 2 | 6292 |
DNA insertion or deletion binding | 5.0527E-7 | 2 | 5 | 2 | 6292 |
DNA secondary structure binding | 1.819E-6 | 2 | 9 | 2 | 6292 |
double-stranded DNA binding | 1.2783E-5 | 2 | 23 | 2 | 6292 |
structure-specific DNA binding | 4.7798E-5 | 2 | 44 | 2 | 6292 |
single base insertion or deletion binding | 6.3568E-4 | 2 | 2 | 1 | 6292 |
double-strand/single-strand DNA junction binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
loop DNA binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
Y-form DNA binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
guanine/thymine mispair binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
four-way junction DNA binding | 1.2712E-3 | 2 | 4 | 1 | 6292 |
DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
ATP binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |
adenyl ribonucleotide binding | 7.9314E-3 | 2 | 25 | 1 | 6292 |
adenyl nucleotide binding | 9.5139E-3 | 2 | 30 | 1 | 6292 |
purine nucleoside binding | 9.8303E-3 | 2 | 31 | 1 | 6292 |