General Information: |
|
Name(s) found: |
YDR170W-A
[SGD]
|
Description(s) found:
SHOW ONLY BEST |
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Organism: | Saccharomyces cerevisiae |
Length: | 440 amino acids |
Gene Ontology: |
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Cellular Component: |
retrotransposon nucleocapsid
[ISS]
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Biological Process: |
transposition, RNA-mediated
[ISS]
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Molecular Function: |
RNA binding
[ISS]
protein binding [ISS] |
Sequence: |
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Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51 | | | | | | 1 MESQQLSQHS PISHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVFTQA NSQQPTTPPS 60 61 AAVPENHHHA SPQAAQVPLP QNGPYPQQRM MTPQQANISG WPVYGHPSLM PYPPYQMSPM 120 121 YAPPGAQSQF TQYPQYVGTH LNTPSPESGN SFPDSSSAKS NMTSTNQHVR PPPILTSPND 180 181 FLNWVKIYIK FLQNSNLGDI IPTATRKAVR QMTDDELTFL CHTFQLFALS QFLPTWVKDI 240 241 LSVDYTDIMK ILSKSINKMQ SDTQEVNDIT TLANLHYNGS TPADAFEAEV TNILDRLKNN 300 301 GIPINNKVAC QFIMRGLSGE YKFLRYARHR YIHMTVADLF SDIHSMYEEQ QESKRNKSTY 360 361 RRSPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA HNVSTSNNFP GPDNDLIRGS 420 421 TTEPIQLKNK HDLHLRPGTY |
  | PUBLICATION | TOPOLOGY | COCOMPLEXED PROTEINS |
View Details | Ho Y, et al. (2002) | BUR2 CDC25 CDC28 CKI1 CKS1 CLB2 CLB3 CLB5 CLN1 GCR2 GIN4 HOM3 HYP2 IRA1 IRA2 MYO2 MYO4 NAP1 PMD1 PRS2 PRS3 PRS5 RIM11 TPS1 TSL1 YDR170W-A YER138C YER160C YJR027W YJR028W | |
View Details | Qiu et al. (2008) | YDR170W-A YDR210C-C YDR210C-D YER160C YOR343W-A YOR343W-B |
The following runs contain data for this protein:
  | BAIT | COMMENTS | PUBLICATION |
View Run | his-HA tag on RPA135 | Schneider, DA, et al. (2006) | |
View Run | his-HA tag on RPA135 | Schneider, DA, et al. (2006) | |
View Run | sample cbf3 from feb 2005 | Sandall S, et all (2006) | |
View Run | No Comments | Schneider, DA, et al. (2006) | |
View Run | Sample 2- cpn2 from june 2005 | McCusker D, et al (2007) | |
View Run | Sample 3 - cpn + atp, from june 2005 | McCusker D, et al (2007) |
SHOWING SINGLE HITS. [ Hide Single Hits ]
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  | PROTEIN(S) | PUBLICATION |
View Data |
|
Huh WK, et al. (2003) |
Domains predicted:
# | Region(s) | Method | Confidence | Match Description | |
1 | View Details | [1..175] | 77.886057 | No description for PF01021.10 was found. No confident structure predictions are available. | |
2 | View Details | [176..329] | N/A | Confident ab initio structure predictions are available. | |
3 | View Details | [330..440] | 1.007969 | View MSA. No confident structure predictions are available. |
Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
Confidence of classification: | 0.98 |
Source: Reynolds et al. (2008)