| Protein: | SGS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1447 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SGS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1447] | [1..1447] |
|
|
0.0 | [236..1287] | [174..1290] |
|
|
0.0 | [242..1285] | [160..1240] |
|
|
0.0 | [241..1305] | [175..1311] |
|
|
0.0 | [420..1283] | [216..1110] |
|
|
0.0 | [435..1445] | [271..1290] |
|
|
0.0 | [211..1435] | [26..1168] |
|
|
0.0 | [662..1275] | [7..602] |
|
|
0.0 | [662..1356] | [2..702] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MVTKPSHNLR REHKWLKETA TLQEDKDFVF QAIQKHIANK RPKTNSPPTT PSKDECGPGT 60
61 TNFITSIPAS GPTNTATKQH EVMQTLSNDT EWLSYTATSN QYADVPMVDI PASTSVVSNP 120
121 RTPNGSKTHN FNTF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [135-654] |
1 11 21 31 41 51
| | | | | |
1 RPHMASSLVE NDSSRNLGSR NNNKSVIDNS SIGKQLENDI KLEVIRLQGS LIMALKEQSK 60
61 LLLQKCSIIE STSLSEDAKR LQLSRDIRPQ LSNMSIRIDS LEKEIIKAKK DGMSKDQSKG 120
121 RSQVSSQDDN IISSILPSPL EYNTSSRNSN LTSTTATTVT KALAITGAKQ NITNNTGKNS 180
181 NNDSNNDDLI QVLDDEDDID CDPPVILKEG APHSPAFPHL HMTSEEQDEL TRRRNMRSRE 240
241 PVNYRIPDRD DPFDYVMGKS LRDDYPDVER EEDELTMEAE DDAHSSYMTT RDEEKEENEL 300
301 LNQSDFDFVV NDDLDPTQDT DYHDNMDVSA NIQESSQEGD TRSTITLSQN KNVQVILSSP 360
361 TAQSVPSNGQ NQIGVEHIDL LEDDLEKDAI LDDSMSFSFG RQHMPMSHSD LELIDSEKEN 420
421 EDFEEDNNNN GIEYLSDSDL ERFDEERENR TQVADIQELD NDLKIITERK LTGDNEHPPP 480
481 SWSPKIKREK SSVSQKDEED DFDDDFSLSD IVSKSNLSSK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [655-867] |
1 11 21 31 41 51
| | | | | |
1 TNGPTYPWSD EVLYRLHEVF KLPGFRPNQL EAVNATLQGK DVFVLMPTGG GKSLCYQLPA 60
61 VVKSGKTHGT TIVISPLISL MQDQVEHLLN KNIKASMFSS RGTAEQRRQT FNLFINGLLD 120
121 LVYISPEMIS ASEQCKRAIS RLYADGKLAR IVVDEAHCVS NWGHDFRPDY KELKFFKREY 180
181 PDIPMIALTA TASEQVRMDI IHNLELKEPV FLK
|
| Detection Method: | |
| Confidence: | 197.9691 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [868-1017] |
1 11 21 31 41 51
| | | | | |
1 QSFNRTNLYY EVNKKTKNTI FEICDAVKSR FKNQTGIIYC HSKKSCEQTS AQMQRNGIKC 60
61 AYYHAGMEPD ERLSVQKAWQ ADEIQVICAT VAFGMGIDKP DVRFVYHFTV PRTLEGYYQE 120
121 TGRAGRDGNY SYCITYFSFR DIRTMQTMIQ
|
| Detection Method: | |
| Confidence: | 197.9691 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1018-1156] |
1 11 21 31 41 51
| | | | | |
1 KDKNLDRENK EKHLNKLQQV MAYCDNVTDC RRKLVLSYFN EDFDSKLCHK NCDNCRNSAN 60
61 VINEERDVTE PAKKIVKLVE SIQNERVTII YCQDVFKGSR SSKIVQANHD TLEEHGIGKS 120
121 MQKSEIERIF FHLITIRVL
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1d2mA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed RNA polymerase activity | 3.24179656806626 | bayes_pls_golite062009 |
| RNA polymerase activity | 3.24179656806626 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.86764755795127 | bayes_pls_golite062009 |
| transcription regulator activity | 2.21457679362657 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.94584323396575 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.94584323396575 | bayes_pls_golite062009 |
| binding | 1.9212205923594 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.68565168715612 | bayes_pls_golite062009 |
| DNA helicase activity | 1.46069986266132 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.34255479264918 | bayes_pls_golite062009 |
| catalytic activity | 1.17990683373825 | bayes_pls_golite062009 |
| hydrolase activity | 1.08890095536803 | bayes_pls_golite062009 |
| endonuclease activity | 0.876142054476658 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.54480131475963 | bayes_pls_golite062009 |
| protein binding | 0.497114544861103 | bayes_pls_golite062009 |
| ribonuclease activity | 0.35631508447468 | bayes_pls_golite062009 |
| helicase activity | 0.112889920470041 | bayes_pls_golite062009 |
|
Region A: Residues: [1157-1269] |
1 11 21 31 41 51
| | | | | |
1 QEYSIMNNSG FASSYVKVGP NAKKLLTGKM EIKMQFTISA PNSRPSTSSS FQANEDNIPV 60
61 IAQKSTTIGG NVAANPPRFI SAKEHLRSYT YGGSTMGSSH PITLKNTSDL RST
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.442 | 0.831 | meiotic chromosome segregation | b.1.1 | Immunoglobulin |
|
Region A: Residues: [1270-1373] |
1 11 21 31 41 51
| | | | | |
1 QELNNLRMTY ERLRELSLNL GNRMVPPVGN FMPDSILKKM AAILPMNDSA FATLGTVEDK 60
61 YRRRFKYFKA TIADLSKKRS SEDHEKYDTI LNDEFVNRAA ASSN
|
| Detection Method: | |
| Confidence: | 405.440336 |
| Match: | 1d8bA_ |
| Description: | HRDC domain from RecQ helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1374-1447] |
1 11 21 31 41 51
| | | | | |
1 GIAQSTGTKS KFFGANLNEA KENEQIINQI RQSQLPKNTT SSKSGTRSIS KSSKKSANGR 60
61 RGFRNYRGHY RGRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
