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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 9 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA helicase complex 2.4473E-23 9 11 8 6292
Ino80 complex 2.4473E-23 9 11 8 6292
nuclear chromatin 1.9763E-15 9 73 8 6292
chromatin 3.0918E-15 9 77 8 6292
chromatin remodeling complex 2.5076E-14 9 99 8 6292
nuclear chromosome part 5.2445E-12 9 190 8 6292
nuclear chromosome 2.2998E-11 9 228 8 6292
chromosomal part 3.1455E-11 9 237 8 6292
chromosome 1.0149E-10 9 274 8 6292
Swr1 complex 9.1317E-7 9 15 3 6292
non-membrane-bounded organelle 2.2129E-6 9 959 8 6292
intracellular non-membrane-bounded organelle 2.2129E-6 9 959 8 6292
nuclear part 6.6425E-6 9 1103 8 6292
protein complex 8.4269E-6 9 1137 8 6292
nucleus 3.9292E-5 9 2041 9 6292
macromolecular complex 1.4222E-4 9 1635 8 6292
intracellular organelle part 1.8134E-3 9 2282 8 6292
organelle part 1.8134E-3 9 2282 8 6292
membrane-bounded organelle 9.9391E-3 9 3771 9 6292
intracellular membrane-bounded organelle 9.9391E-3 9 3771 9 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling 4.444E-13 9 68 7 6292
chromatin modification 2.9424E-10 9 168 7 6292
chromatin organization 1.1201E-9 9 203 7 6292
chromosome organization 1.2328E-6 9 555 7 6292
organelle organization 1.4948E-4 9 1127 7 6292
transcription from RNA polymerase II promoter 8.0335E-4 9 335 4 6292
cellular component organization 1.3818E-3 9 1582 7 6292
regulation of transcription from RNA polymerase II promoter 3.3545E-3 9 228 3 6292
transcription, DNA-dependent 3.6736E-3 9 503 4 6292
RNA biosynthetic process 3.8095E-3 9 508 4 6292
transcription 5.1608E-3 9 552 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent 5'-3' DNA helicase activity 3.2215E-14 9 7 5 6292
5'-3' DNA helicase activity 8.5861E-14 9 8 5 6292
ATP-dependent DNA helicase activity 1.3067E-11 9 18 5 6292
DNA helicase activity 4.2078E-10 9 34 5 6292
ATP-dependent helicase activity 2.5701E-9 9 48 5 6292
purine NTP-dependent helicase activity 2.5701E-9 9 48 5 6292
DNA-dependent ATPase activity 5.202E-9 9 55 5 6292
helicase activity 4.2772E-8 9 83 5 6292
ATPase activity, coupled 8.1311E-7 9 149 5 6292
ATPase activity 4.5683E-6 9 211 5 6292
nucleoside-triphosphatase activity 4.0153E-5 9 329 5 6292
hydrolase activity, acting on acid anhydrides 5.6462E-5 9 353 5 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.6462E-5 9 353 5 6292
pyrophosphatase activity 5.6462E-5 9 353 5 6292
hydrolase activity 4.7759E-3 9 911 5 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle