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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 9 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA helicase complex 1.2987E-27 9 11 9 6292
Ino80 complex 1.2987E-27 9 11 9 6292
nuclear chromatin 2.2924E-18 9 73 9 6292
chromatin 3.8093E-18 9 77 9 6292
chromatin remodeling complex 4.0875E-17 9 99 9 6292
nuclear chromosome part 1.7323E-14 9 190 9 6292
nuclear chromosome 9.2334E-14 9 228 9 6292
chromosomal part 1.3163E-13 9 237 9 6292
chromosome 4.96E-13 9 274 9 6292
non-membrane-bounded organelle 4.2994E-8 9 959 9 6292
intracellular non-membrane-bounded organelle 4.2994E-8 9 959 9 6292
nuclear part 1.5218E-7 9 1103 9 6292
protein complex 2.0019E-7 9 1137 9 6292
Swr1 complex 9.1317E-7 9 15 3 6292
macromolecular complex 5.3146E-6 9 1635 9 6292
nucleus 3.9292E-5 9 2041 9 6292
intracellular organelle part 1.0749E-4 9 2282 9 6292
organelle part 1.0749E-4 9 2282 9 6292
membrane-bounded organelle 9.9391E-3 9 3771 9 6292
intracellular membrane-bounded organelle 9.9391E-3 9 3771 9 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling 1.0875E-15 9 68 8 6292
chromatin modification 1.9271E-12 9 168 8 6292
chromatin organization 8.975E-12 9 203 8 6292
chromosome organization 2.9055E-8 9 555 8 6292
organelle organization 7.8634E-6 9 1127 8 6292
cellular component organization 1.1027E-4 9 1582 8 6292
transcription from RNA polymerase II promoter 8.0335E-4 9 335 4 6292
regulation of transcription from RNA polymerase II promoter 3.3545E-3 9 228 3 6292
transcription, DNA-dependent 3.6736E-3 9 503 4 6292
RNA biosynthetic process 3.8095E-3 9 508 4 6292
transcription 5.1608E-3 9 552 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent 5'-3' DNA helicase activity 6.8365E-18 9 7 6 6292
5'-3' DNA helicase activity 2.7335E-17 9 8 6 6292
ATP-dependent DNA helicase activity 1.8049E-14 9 18 6 6292
DNA helicase activity 1.299E-12 9 34 6 6292
ATP-dependent helicase activity 1.1785E-11 9 48 6 6292
purine NTP-dependent helicase activity 1.1785E-11 9 48 6 6292
DNA-dependent ATPase activity 2.776E-11 9 55 6 6292
helicase activity 3.5729E-10 9 83 6 6292
ATPase activity, coupled 1.2641E-8 9 149 6 6292
ATPase activity 1.0238E-7 9 211 6 6292
nucleoside-triphosphatase activity 1.4362E-6 9 329 6 6292
hydrolase activity, acting on acid anhydrides 2.1756E-6 9 353 6 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.1756E-6 9 353 6 6292
pyrophosphatase activity 2.1756E-6 9 353 6 6292
hydrolase activity 5.1457E-4 9 911 6 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle