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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 9 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
ARP4
  • nucleus
  • nuclear chromatin
  • NuA4 histone acetyltransferase complex
  • Swr1 complex
  • Ino80 complex
  • DNA repair
  • chromatin remodeling
  • regulation of transcription, DNA-dependent
  • histone acetylation
  • chromatin organization
  • regulation of transcription from RNA polymerase II promoter
  • histone acetyltransferase activity
  • ATP-dependent 5'-3' DNA helicase activity
  • chromatin binding
  • ARP6
  • cytoplasm
  • Swr1 complex
  • chromatin remodeling
  • histone exchange
  • protein targeting to vacuole
  • nucleosome binding
  • RVB1
  • nucleus
  • Swr1 complex
  • Ino80 complex
  • chromatin remodeling complex
  • chromatin remodeling
  • regulation of transcription from RNA polymerase II promoter
  • ATPase activity
  • ATP-dependent 5'-3' DNA helicase activity
  • RVB2
  • nucleus
  • Swr1 complex
  • Ino80 complex
  • nuclear outer membrane
  • chromatin remodeling complex
  • chromatin remodeling
  • snoRNA metabolic process
  • regulation of transcription from RNA polymerase II promoter
  • ATPase activity
  • ATP-dependent 5'-3' DNA helicase activity
  • SWC3
  • nucleus
  • mitochondrion
  • Swr1 complex
  • chromatin remodeling
  • response to drug
  • histone exchange
  • endoplasmic reticulum organization
  • molecular_function
  • SWC5
  • nucleus
  • Swr1 complex
  • chromatin remodeling
  • histone exchange
  • molecular_function
  • SWR1
  • nucleus
  • Swr1 complex
  • chromatin remodeling
  • histone exchange
  • structural molecule activity
  • VPS71
  • nucleus
  • Swr1 complex
  • chromatin remodeling
  • histone exchange
  • protein targeting to vacuole
  • nucleosome binding
  • VPS72
  • nucleus
  • cytoplasm
  • Swr1 complex
  • chromatin remodeling
  • histone exchange
  • protein targeting to vacuole
  • histone binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    Swr1 complex 1.1818E-25 9 15 9 6292
    nuclear chromatin 2.2924E-18 9 73 9 6292
    chromatin 3.8093E-18 9 77 9 6292
    chromatin remodeling complex 4.0875E-17 9 99 9 6292
    nuclear chromosome part 1.7323E-14 9 190 9 6292
    nuclear chromosome 9.2334E-14 9 228 9 6292
    chromosomal part 1.3163E-13 9 237 9 6292
    chromosome 4.96E-13 9 274 9 6292
    non-membrane-bounded organelle 4.2994E-8 9 959 9 6292
    intracellular non-membrane-bounded organelle 4.2994E-8 9 959 9 6292
    nuclear part 1.5218E-7 9 1103 9 6292
    protein complex 2.0019E-7 9 1137 9 6292
    DNA helicase complex 3.321E-7 9 11 3 6292
    Ino80 complex 3.321E-7 9 11 3 6292
    macromolecular complex 5.3146E-6 9 1635 9 6292
    nucleus 3.9292E-5 9 2041 9 6292
    intracellular organelle part 1.0749E-4 9 2282 9 6292
    organelle part 1.0749E-4 9 2282 9 6292
    membrane-bounded organelle 9.9391E-3 9 3771 9 6292
    intracellular membrane-bounded organelle 9.9391E-3 9 3771 9 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    chromatin remodeling 1.1636E-18 9 68 9 6292
    histone exchange 2.0484E-16 9 10 6 6292
    chromatin modification 5.5782E-15 9 168 9 6292
    chromatin organization 3.1823E-14 9 203 9 6292
    ATP-dependent chromatin remodeling 2.2311E-13 9 26 6 6292
    nucleosome organization 4.5976E-13 9 29 6 6292
    chromosome organization 3.0459E-10 9 555 9 6292
    organelle organization 1.8484E-7 9 1127 9 6292
    cellular macromolecular complex subunit organization 3.4781E-7 9 259 6 6292
    macromolecular complex subunit organization 2.3249E-6 9 357 6 6292
    cellular component organization 3.9477E-6 9 1582 9 6292
    protein targeting to vacuole 1.0115E-4 9 69 3 6292
    vacuolar transport 4.6114E-4 9 115 3 6292
    regulation of transcription from RNA polymerase II promoter 3.3545E-3 9 228 3 6292
    protein targeting 3.6558E-3 9 235 3 6292
    intracellular protein transport 4.6079E-3 9 255 3 6292
    protein transport 5.3575E-3 9 269 3 6292
    establishment of protein localization 5.4703E-3 9 271 3 6292
    cellular protein localization 5.6423E-3 9 274 3 6292
    cellular macromolecule localization 6.2396E-3 9 284 3 6292
    protein localization 7.4778E-3 9 303 3 6292
    endoplasmic reticulum organization 8.5551E-3 9 6 1 6292
    transcription from RNA polymerase II promoter 9.881E-3 9 335 3 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    ATP-dependent 5'-3' DNA helicase activity 7.0647E-8 9 7 3 6292
    5'-3' DNA helicase activity 1.1295E-7 9 8 3 6292
    ATP-dependent DNA helicase activity 1.6342E-6 9 18 3 6292
    nucleosome binding 1.819E-6 9 2 2 6292
    chromatin binding 1.081E-5 9 33 3 6292
    DNA helicase activity 1.1847E-5 9 34 3 6292
    ATP-dependent helicase activity 3.39E-5 9 48 3 6292
    purine NTP-dependent helicase activity 3.39E-5 9 48 3 6292
    DNA-dependent ATPase activity 5.1163E-5 9 55 3 6292
    helicase activity 1.7561E-4 9 83 3 6292
    ATPase activity, coupled 9.8455E-4 9 149 3 6292
    ATPase activity 2.6889E-3 9 211 3 6292
    nucleoside-triphosphatase activity 9.3993E-3 9 329 3 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle