YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: bl-PC

General Information:
Name(s) found: bl-PC / FBpp0089363 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|45552763|ref|NP_995906.1| bancal, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|45445681|gb|AAM68389.2| bancal, isoform C [Drosophila melanogaster] [NCBI NR]
  • The gene bancal is referred to in FlyBase by the symbol Dmel\bl (CG13425, FBgn0015907). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:16475010..16494359. It has the cytological map location 57A6-57A7. It is reported to have molecular function</span>: mRNA binding; transcription factor binding. There is experimental evidence that it is involved in the biological process</span>: regulation of alternative nuclear mRNA splicing, via spliceosome. 28 alleles are reported. The phenotypes of these alleles are annotated with 12 unique terms, many of which group under: adult segment; peripheral nervous system; thoracic segment; nervous system; external compound sense organ; organ system; adult mesothoracic segment; appendage segment; dorsal thoracic disc; compound cell cluster organ. It has 5 annotated transcripts and 5 annotated polypeptides. [FlyBase]
  • (AAM68389) CG13425-PC [DrosMelano7227.FASTAC.txt]
  • CG13425-PC, isoform C [Drosophila melanogaster]gi|45552763|ref|NP_995906.1| CG13425-PC [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(16477166..16477172,16483062..16483168,16483263..16483319,16485053..16485096,16485958..16486030,16486104..16486199,16492201..16493124,16493187..16493356,16493949..16493979); ID=FBpp0089363; name=bl-PC; parent=FBgn0015907,FBtr00862 [fly-100309-contam.fasta]
  • CG13425-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • bancal CG13425-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(16477166..16477172,16483062..16483168,16483263..16483319,16485053..16485096,16485958..16486030,16486104..16486199,16492201..16493124,16493187..16493356,16493949..16493979); ID=FBpp0089363; name=bl-PC; parent=FBgn0015907,FBtr0086221; dbxref=FlyBase:FBpp0089363,FlyBase_Annotation_IDs:CG13425-PC,GB_protein:AAM68389.2,REFSEQ:NP_995906,GB_protein:AAM68389; MD5=cb17b32b5073ab65d7bd32ffddac4c36; length=502; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(16477166..16477172,16483062..16483168,16483263..16483319,16485053..16485096,16485958..16486030,16486104..16486199,16492201..16493124,16493187..16493356,16493949..16493979); ID=FBpp0089363; name=bl-PC; parent=FBgn0015907,FBtr0086221; dbxref=FlyBase:FBpp0089363,FlyBase_Annotation_IDs:CG13425-PC,GB_protein:AAM68389.2,REFSEQ:NP_995906,GB_protein:AAM68389; MD5=cb17b32b5073ab65d7bd32ffddac4c36; length=502; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Bancal, isoform C OS=Drosophila melanogaster GN=bl PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(16477166..16477172,16483062..16483168,16483263..16483319,16485053..16485096,16485958..16486030,16486104..16486199,16492201..16493124,16493187..16493356,16493949..16493979); ID=FBpp0089363; name=bl-PC; parent=FBgn0015907,FBtr0086221; dbxref=FlyBase:FBpp0089363,FlyBase_Annotation_IDs:CG13425-PC,GB_protein:AAM68389.2,REFSEQ:NP_995906,GB_protein:AAM68389,FlyMine:FBpp0089363,modMine:FBpp0089363; MD5=cb17b32b5073ab65d7bd32ffddac4c36; length=502; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(20589661..20589667,20595557..20595663,20595758..20595814,20597548..20597591,20598453..20598525,20598599..20598694,20604696..20605619,20605682..20605851,20606444..20606474); ID=FBpp0089363; name=bl-PC; parent=FBgn0267791,FBtr0086221; dbxref=FlyBase:FBpp0089363,FlyBase_Annotation_IDs:CG13425-PC,GB_protein:AAM68389.2,REFSEQ:NP_995906,GB_protein:AAM68389,FlyMine:FBpp0089363,modMine:FBpp0089363; MD5=cb17b32b5073ab65d7bd32ffddac4c36; length=502; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(20589661..20589667,20595557..20595663,20595758..20595814,20597548..20597591,20598453..20598525,20598599..20598694,20604696..20605619,20605682..20605851,20606444..20606474); ID=FBpp0089363; name=HnRNP-K-PC; parent=FBgn0267791,FBtr0086221; dbxref=FlyBase:FBpp0089363,FlyBase_Annotation_IDs:CG13425-PC,GB_protein:AAM68389.2,REFSEQ:NP_995906,GB_protein:AAM68389,FlyMine:FBpp0089363,modMine:FBpp0089363; MD5=cb17b32b5073ab65d7bd32ffddac4c36; length=502; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Bancal, isoform C OS=Drosophila melanogaster GN=HnRNP-K PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0089363 type=protein; loc=2R:join(20589661..20589667,20595557..20595663,20595758..20595814,20597548..20597591,20598453..20598525,20598599..20598694,20604696..20605619,20605682..20605851,20606444..20606474); ID=FBpp0089363; name=HnRNP-K-PC; parent=FBgn0267791,FBtr0086221; dbxref=FlyBase:FBpp0089363,FlyBase_Annotation_IDs:CG13425-PC,GB_protein:AAM68389.2,REFSEQ:NP_995906,GB_protein:AAM68389,FlyMine:FBpp0089363,modMine:FBpp0089363; MD5=cb17b32b5073ab65d7bd32ffddac4c36; length=502; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(20589661..20589667,20595557..20595663,20595758..20595814,20597548..20597591,20598453..20598525,20598599..20598694,20604696..20605619,20605682..20605851,20606444..20606474); ID=FBpp0089363; name=HnRNP-K-PC; parent=FBgn0267791,FBtr0086221; dbxref=FlyBase:FBpp0089363,FlyBase_Annotation_IDs:CG13425-PC,GB_protein:AAM68389.2,REFSEQ:NP_995906,GB_protein:AAM68389,UniProt/TrEMBL:A1ZBW0,FlyMine:FBpp0089363,modMine:FBpp0089363; MD5=cb17b32b5073ab65d7bd32ffddac4c36; length=502; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 502 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC][IDA][TAS]
    ribonucleoprotein complex [ISS]
    omega speckle [IDA]
    cytoplasm [TAS]
    chromatin [IDA]
    Biological Process: cell proliferation [TAS]
    regulation of alternative nuclear mRNA splicing, via spliceosome [IMP]
    cell fate commitment [TAS]
    appendage morphogenesis [TAS]
    imaginal disc growth [TAS]
    Molecular Function: RNA binding [IEA]
    mRNA binding [NAS][TAS]
    transcription factor binding [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRLRMKRE MNDEGEGPQD QKRNRRNEET VRILIPSSIA GAVIGKGGQH IQKMRTQYKA  60
   61 TVSVDDSQGP ERTIQISADI ESTLEIITEM LKYFEERDED FDVRLLIHQS LAGCVIGKGG 120
  121 QKIKEIRDRI GCRFLKVFSN VAPQSTDRVV QTVGKQSQVI EAVREVITLT RDTPIKGAIH 180
  181 NYDPMNFDRV YADEYGGYGT GSGSTRPSQR GNNRNGGGAG GVAGGAAGGN GGGFNAGGAR 240
  241 GNAGGRGGAD RFGGAAGGAV AGAGMGQRDN PFINPWANGG GGDVDGFGNN AGGAGGFAGN 300
  301 SFGGGAGGPF GGGSFGNNGF GGGPSDFGGN SGNFGQAQGT NSLPSLGSFS QNQGGTSSLP 360
  361 SLGSFGQNPG GPGGLGNGLS GGANGGVGTL GGANGAGGFN AVGGANGGPN GSPNAATNVP 420
  421 QGHDPNNSTQ VTIPKELAGA IIGKGGGRIR RIRNESSAYI TIDEPLPNSN DRIITISGTP 480
  481 KQIQMAQYLL QQSVHENGRR NI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 26.39794 No description for 2annA was found.
    2 View Details [133..443] PSI-BLAST 22.154902 No description for 1y0fB was found.
    3 View Details [444..502] PSI-BLAST 16.39794 HnRNP K, KH3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  6.76415077523249 bayes_pls_golite062009
  • mRNA binding
    		•  5.07455187994216 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.78650555542715 bayes_pls_golite062009
  • binding
    		•  3.45962790790935 bayes_pls_golite062009
    		• 2.87067043110488 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.28364833275102 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  2.05765562493656 bayes_pls_golite062009
  • DNA binding
    		•  2.03207983673692 bayes_pls_golite062009
  • transcription factor activity
    		•  1.30278154718684 bayes_pls_golite062009
  • protein binding
    		•  1.16541072642796 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.981003625136521 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.489176583045793 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.392035003865213 bayes_pls_golite062009
  • transcription activator activity
    		•  0.324382863054631 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.32222928997178 bayes_pls_golite062009
  • transcription factor binding
    		•  0.254024117548226 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.1069917291606 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0321875054165348 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle