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Protein Overview: YDCS_ECOLI

General Information:
Name(s) found: YDCS_ECOLI [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Putative ABC transporter periplasmic-binding protein ydcS precursor - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 381 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTFARSSL CALSMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT DKQYDWVTQF  60
   61 EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR LIMGKRVQPI NTALIPNWKT 120
  121 LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM YNTKTFPTPP DSWQVVFVEQ NLPDGKSNKG 180
  181 RVQAYDGPIY IADAALFVKA TQPQLGISDP YQLTEEQYQA VLKVLRAQHS LIHRYWHDTT 240
  241 VQMSDFKNEG VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY 300
  301 KWMNWSLTPK VQGDVAAWFG SLPVVPEGCK ASPLLGEKGC ETNGFNYFDK IAFWKTPIAE 360
  361 GGKFVPYSRW TQDYIAIMGG R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..381] PSI-BLAST 60.30103 Putrescine receptor (PotF)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polyamine transmembrane transporter activity
    		•  3.75333123335738 bayes_pls_golite062009
  • polyamine-transporting ATPase activity
    		•  3.31917192223691 bayes_pls_golite062009
  • amine transmembrane transporter activity
    		•  2.8505643526173 bayes_pls_golite062009
  • transporter activity
    		•  2.37767937786605 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.14027396604232 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.98824826924235 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  1.92247368464925 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  1.91778402126342 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  1.91458600392598 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  1.91458600392598 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  1.91424996753266 bayes_pls_golite062009
  • amino acid transmembrane transporter activity
    		•  1.88446253507704 bayes_pls_golite062009
  • carboxylic acid transmembrane transporter activity
    		•  1.68289701302071 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  1.65555448677681 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  1.59154512845516 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.51716707550629 bayes_pls_golite062009
  • ATPase activity
    		•  1.44327228942016 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.36989838880058 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.33033652028872 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.31993399326424 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.31926578892427 bayes_pls_golite062009
  • amine-transporting ATPase activity
    		•  1.26059419028501 bayes_pls_golite062009
  • amino acid-transporting ATPase activity
    		•  1.25084210844339 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.88733921737959 bayes_pls_golite062009
  • binding
    		•  0.841985743602294 bayes_pls_golite062009
  • putrescine transmembrane transporter activity
    		•  0.532006404866991 bayes_pls_golite062009
  • hydrolase activity
    		•  0.52200036125335 bayes_pls_golite062009
  • amine binding
    		•  0.48583609326514 bayes_pls_golite062009
  • polyamine binding
    		•  0.29196808081737 bayes_pls_golite062009
  • catalytic activity
    		•  0.278324746769832 bayes_pls_golite062009
  • amino acid binding
    		•  0.0252217029836901 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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