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Protein Overview: VIP3_ARATH

General Information:
Name(s) found: VIP3_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T08544 hypothetical protein F27B13.70 - Arabidopsis thaliana [NCBI NR]
  • gi|7269882|emb|CAB79741.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4914407|emb|CAB43658.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30725340|gb|AAP37692.1| At4g29830 [Arabidopsis thaliana] [NCBI NR]
  • gi|15233721|ref|NP_194712.1| VIP3 (vernalization independence 3); nucleotide binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • WD repeat-containing protein VIP3 OS=Arabidopsis thaliana GN=VIP3 PE=1 SV=1 [Swiss-Prot]
  • (Q9SZQ5) Hypothetical protein (At4g29830) [athaliana3702.FASTAC.txt]
  • At4g29830 [Arabidopsis thaliana]gi|4914407|emb|CAB43658.1| putative protein [Arabidopsis thaliana]gi|7269882|emb|CAB79741.1| putative protein [Arabidopsis thaliana]gi|7486232|pir||T08544 hypothetical protein F27B13.70 - Arabidopsis thalianagi|15233721 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transducin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: VIP3 | VIP3 (VERNALIZATION INDEPENDENCE 3); nucleotide binding | chr4:14597734-14599163 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At4g29830 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • VIP3 (VERNALIZATION INDEPENDENCE 3); nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: VIP3 | Transducin/WD40 repeat-like superfamily protein | chr4:14597728-14599157 FORWARD LENGTH=321 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At4g29830 OS=Arabidopsis thaliana GN=F27B13.70 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 321 amino acids

    Gene Ontology:
    Cellular Component: heterotrimeric G-protein complex [ISS]
    CUL4 RING ubiquitin ligase complex [IPI]
    Biological Process: histone H3-K36 methylation [IMP]
    negative regulation of flower development [IGI][IMP]
    histone H3-K4 methylation [IMP]
    Molecular Function: nucleotide binding [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS  60
   61 LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA PPSEVWGMQF EPKGTILAVA 120
  121 GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG 180
  181 TICVFDVDRS KLLHQLEGHN MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS 240
  241 GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG 300
  301 VRAGRLASVS DDKSVSLYDY S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..321] PSI-BLAST 76.0 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone methyltransferase activity (H3-K4 specific)
    		•  4.71992275913384 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.25521258308263 bayes_pls_golite062009
  • GTPase activity
    		•  3.20623818975951 bayes_pls_golite062009
    		• 3.12192428374026 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • protein binding
    		•  2.26925404328312 bayes_pls_golite062009
  • RNA binding
    		•  2.1927334052131 bayes_pls_golite062009
  • G-protein-coupled receptor binding
    		•  2.10926890165617 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.10348788067437 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.00420268007946 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.85632145559025 bayes_pls_golite062009
  • myosin heavy chain kinase activity
    		•  1.67241027239254 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.53722103498827 bayes_pls_golite062009
  • DNA binding
    		•  1.53482914288832 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.35170368882651 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.26395898062853 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • receptor activity
    		•  1.12819778129653 bayes_pls_golite062009
  • actin binding
    		•  1.08902852052152 bayes_pls_golite062009
  • myosin II binding
    		•  0.990046481880222 bayes_pls_golite062009
  • actin filament binding
    		•  0.976656531652978 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.974380908248463 bayes_pls_golite062009
  • signal transducer activity
    		•  0.974380908248463 bayes_pls_golite062009
  • type 1 angiotensin receptor binding
    		•  0.920323565472959 bayes_pls_golite062009
  • angiotensin receptor binding
    		•  0.920323565472959 bayes_pls_golite062009
  • transcription factor activity
    		•  0.897833210520351 bayes_pls_golite062009
  • kinase activity
    		•  0.807669232329985 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.805273887494167 bayes_pls_golite062009
  • transcription activator activity
    		•  0.724420384084538 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.634547834947756 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.624053529462119 bayes_pls_golite062009
  • protein kinase activity
    		•  0.544118712921054 bayes_pls_golite062009
  • transcription factor binding
    		•  0.469377587704245 bayes_pls_golite062009
  • snoRNA binding
    		•  0.347797037104681 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.245000508226811 bayes_pls_golite062009
  • hydrolase activity
    		•  0.181211933860468 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  0.0803897416817422 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.0676565515282608 bayes_pls_golite062009
  • receptor binding
    		•  0.0390635451962911 bayes_pls_golite062009
  • kinase binding
    		•  0.0366162235750993 bayes_pls_golite062009
  • protein kinase binding
    		•  0.00858004043229577 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.00335766408304172 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle