YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|11994210, gi|...

General Information:
Name(s) found: gi|42564980 [NCBI NR]
gi|30387569 [NCBI NR]
gi|27311657 [NCBI NR]
gi|11994210 [NCBI NR]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • gi|42564980|ref|NP_188431.3| HON4; DNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|30387569|gb|AAP31950.1| At3g18035 [Arabidopsis thaliana] [NCBI NR]
  • gi|27311657|gb|AAO00794.1| linker histone protein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|11994210|dbj|BAB01332.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 480 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    nucleosome [IEA][ISS]
    Biological Process: nucleosome assembly [IEA][ISS]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH  60
   61 VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG LTSAHAALLT HHLKTLKTSG 120
  121 VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG 180
  181 RGRPPKPKPE SQPQPLQQLP PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR 240
  241 KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR 300
  301 GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG 360
  361 RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG VTSENQAVVQ AIKDLEALTV 420
  421 TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF 480
  481

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] FFAS03 3.08 Histone H5, globular domain
    2 View Details [148..265] MSA 1.184996 View MSA. No confident structure predictions are available.
    3 View Details [266..480] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.683379929086364 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.16959343932447 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0949481158963694 bayes_pls_golite062009
  • DNA binding
    		•  0.00746597740509714 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle