| Protein: | gi|11994210, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 480 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11994210, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
256.0 | [0..2] | [477..731] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH 60
61 VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG LTSAHAALLT HHLKTLKTSG 120
121 VLSMVKKSYK IAGSSTPPAS VAVAAAA
|
| Detection Method: |  |
| Confidence: | 3.08 |
| Match: | 1hstA |
| Description: | Histone H5, globular domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.683379929086364 | bayes_pls_golite062009 |
| transcription regulator activity | 0.16959343932447 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0949481158963694 | bayes_pls_golite062009 |
| DNA binding | 0.00746597740509714 | bayes_pls_golite062009 |
|
Region A: Residues: [148-265] |
1 11 21 31 41 51
| | | | | |
1 AAQGLDVPRS EILHSSNNDP MASGSASQPL KRGRGRPPKP KPESQPQPLQ QLPPTNQVQA 60
61 NGQPIWEQQQ VQSPVPVPTP VTESAKRGPG RPRKNGSAAP ATAPIVQASV MAGIMKRR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [266-480] |
1 11 21 31 41 51
| | | | | |
1 GRPPGRRAAG RQRKPKSVSS TASVYPYVAN GARRRGRPRR VVDPSSIVSV APVGGENVAA 60
61 VAPGMKRGRG RPPKIGGVIS RLIMKPKRGR GRPVGRPRKI GTSVTTGTQD SGELKKKFDI 120
121 FQEKVKEIVK VLKDGVTSEN QAVVQAIKDL EALTVTETVE PQVMEEVQPE ETAAPQTEAQ 180
181 QTEAAETQGG QEEGQEREGE TQTQTEAEAM QEALF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
