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Protein Overview: PSD8A_ARATH

General Information:
Name(s) found: PSD8A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6633812|gb|AAF19671.1|AC009519_5 F1N19.9 [Arabidopsis thaliana] [NCBI NR]
  • gi|32700046|gb|AAP86673.1| 26S proteasome subunit RPN12 [Arabidopsis thaliana] [NCBI NR]
  • pir||H96668 protein F1N19.9 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|23505935|gb|AAN28827.1| At1g64520/F1N19_10 [Arabidopsis thaliana] [NCBI NR]
  • gi|15294148|gb|AAK95251.1|AF410265_1 At1g64520/F1N19_10 [Arabidopsis thaliana] [NCBI NR]
  • gi|15217661|ref|NP_176633.1| RPN12a (Regulatory Particle non-ATPase 12a); peptidase [Arabidopsis thaliana] [NCBI NR]
  • gi|14532466|gb|AAK63961.1| At1g64520/F1N19_10 [Arabidopsis thaliana] [NCBI NR]
  • 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1 [Swiss-Prot]
  • 26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1 [Swiss-Prot]
  • (Q9SGW3) F1N19.9 (AT1G64520/F1N19_10) [athaliana3702.FASTAC.txt]
  • At1g64520/F1N19_10 [Arabidopsis thaliana]gi|32700046|gb|AAP86673.1| 26S proteasome subunit RPN12 [Arabidopsis thaliana]gi|15294148|gb|AAK95251.1| At1g64520/F1N19_10 [Arabidopsis thaliana]gi|14532466|gb|AAK63961.1| At1g64520/F1N19_10 [Arabidopsis thalia [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 26S proteasome regulatory subunit [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: RPN12A | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A); peptidase | chr1:23960122-23961783 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • peptidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 26S proteasome subunit RPN12 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g64520/F1N19_10 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F1N19.9 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RPN12a | regulatory particle non-ATPase 12A | chr1:23956459-23958120 FORWARD LENGTH=267 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 267 amino acids

    Gene Ontology:
    Cellular Component: nucleus [TAS]
    chloroplast envelope [IDA]
    proteasome complex [IDA]
    proteasome regulatory particle, lid subcomplex [ISS]
    Biological Process: protein catabolic process [TAS]
    proteasome assembly [IMP]
    response to cytokinin stimulus [IEP][IMP]
    skotomorphogenesis [IMP]
    post-embryonic root development [IMP]
    cotyledon development [IMP]
    ubiquitin-dependent protein catabolic process [TAS]
    response to auxin stimulus [IMP]
    response to heat [IMP]
    proteasomal ubiquitin-dependent protein catabolic process [IMP]
    flower development [IMP]
    leaf development [IMP]
    regulation of anthocyanin biosynthetic process [IMP]
    response to misfolded protein [IMP]
    Molecular Function: peptidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI  60
   61 ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP QSPQENLILG LNLLRLLVQN 120
  121 RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA 180
  181 KTIRDEIAGC SEKAYDYVSI SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE 240
  241 TAPCKEIPSL QLINQTLSYA RELERIV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..267] FFAS03 2.04 Crystal Structure of Human eIF3k

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.76236644111948 bayes_pls_golite062009
  • hydrolase activity
    		•  2.62777210765927 bayes_pls_golite062009
  • protein binding
    		•  1.5114863464349 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.48815906385664 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.08079130332447 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.06350696248374 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.700922242779288 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.37240198519167 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.224432853777564 bayes_pls_golite062009
  • DNA binding
    		•  0.180353635969032 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.147335771550418 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.142921675412538 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.124542865343065 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle