| Protein: | PSD8A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 267 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD8A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
282.0 | [0..1] | [267..1] |
|
Region A: Residues: [1-267] |
1 11 21 31 41 51
| | | | | |
1 MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI 60
61 ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP QSPQENLILG LNLLRLLVQN 120
121 RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA 180
181 KTIRDEIAGC SEKAYDYVSI SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE 240
241 TAPCKEIPSL QLINQTLSYA RELERIV
|
| Detection Method: |  |
| Confidence: | 2.04 |
| Match: | 1rz4A |
| Description: | Crystal Structure of Human eIF3k |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.76236644111948 | bayes_pls_golite062009 |
| hydrolase activity | 2.62777210765927 | bayes_pls_golite062009 |
| protein binding | 1.5114863464349 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.48815906385664 | bayes_pls_golite062009 |
| nucleic acid binding | 1.08079130332447 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.06350696248374 | bayes_pls_golite062009 |
| transcription repressor activity | 0.700922242779288 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.37240198519167 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.224432853777564 | bayes_pls_golite062009 |
| DNA binding | 0.180353635969032 | bayes_pls_golite062009 |
| transcription regulator activity | 0.147335771550418 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.142921675412538 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.124542865343065 | bayes_pls_golite062009 |
