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Protein Overview: SYKC_ARATH

General Information:
Name(s) found: SYKC_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6041823|gb|AAF02138.1|AC009918_10 lysyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|55583786|sp|Q9ZPI1.1|SYK_ARATH RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA ligase; Short=LysRS [NCBI NR]
  • gi|4325324|gb|AAD17333.1| lysyl-tRNA synthetase; LysRS [Arabidopsis thaliana] [NCBI NR]
  • gi|25083918|gb|AAN72134.1| lysyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|20466171|gb|AAM20403.1| lysyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|15229833|ref|NP_187777.1| ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=1 SV=1 [Swiss-Prot]
  • Lysine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At3g11710 PE=1 SV=1 [Swiss-Prot]
  • (Q9ZPI1) Lysyl-tRNA synthetase (EC 6.1.1.6) [athaliana3702.FASTAC.txt]
  • lysyl-tRNA synthetase [Arabidopsis thaliana]gi|20466171|gb|AAM20403.1| lysyl-tRNA synthetase [Arabidopsis thaliana]gi|25083918|gb|AAN72134.1| lysyl-tRNA synthetase [Arabidopsis thaliana]gi|4325324|gb|AAD17333.1| lysyl-tRNA synthetase; LysRS [Arabidopsi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Lysyl-tRNA synthetase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative | chr3:3702365-3705619 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • lysyl-tRNA synthetase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / aspartate-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • lysyl-tRNA synthetase; LysRS [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS) [nr-271106-contam.fasta]
  • | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3:3702359-3705613 REVERSE LENGTH=626 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 626 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: tRNA aminoacylation for protein translation [IEA]
    lysyl-tRNA aminoacylation [IEA][ISS]
    translation [IEA]
    Molecular Function: ATP binding [ISS]
    lysine-tRNA ligase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGAADQTTK ALSELAMDSS TTLNAAESSA GDGAGPRSKN ALKKEQKMKQ KEEEKRRKDE  60
   61 EKAEKAKQAP KASSQKAVAA DDEEMDATQY YENRLKYLAA EKAKGENPYP HKFAVSMSIP 120
  121 KYIETYGSLN NGDHVENAEE SLAGRIMSKR SSSSKLFFYD LHGDDFKVQV MADASKSGLD 180
  181 EAEFLKLHSN AKRGDIVGVI GFPGKTKRGE LSIFPRSFIL LSHCLHMMPR KADNVNAKKP 240
  241 EIWVPGQTRN PEAYVLKDQE SRYRQRHLDM ILNVEVRQIF RTRAKIISYV RRFLDNKNFL 300
  301 EVETPMMNMI AGGAAARPFV THHNDLDMRL YMRIAPELYL KQLIVGGLER VYEIGKQFRN 360
  361 EGIDLTHNPE FTTCEFYMAF ADYNDLMEMT EVMLSGMVKE LTGGYKIKYN ANGYDKDPIE 420
  421 IDFTPPFRRI EMIGELEKVA KLNIPKDLAS EEANKYLIDA CARFDVKCPP PQTTARLLDK 480
  481 LVGEFLEPTC VNPTFIINQP EIMSPLAKWH RSKSGLTERF ELFINKHELC NAYTELNDPV 540
  541 VQRQRFADQL KDRQSGDDEA MALDETFCNA LEYGLAPTGG WGLGIDRLSM LLTDSLNIKE 600
  601 VLFFPAMRPP QEESAAAQAP LTEEKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..626] PSI-BLAST 147.0 Lysyl-tRNA synthetase (LysRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • lysine-tRNA ligase activity
    		•  11.0047124677093 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.89468709683036 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.89468709683036 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.88410036819636 bayes_pls_golite062009
  • ligase activity
    		•  6.92073480193262 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  3.80084837437429 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  3.4145644216516 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.90150581291897 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.61548498770105 bayes_pls_golite062009
  • structural molecule activity
    		•  2.54582212334303 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.52223115725965 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.46505535069103 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.72215103383322 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.67362693618722 bayes_pls_golite062009
  • binding
    		•  1.54403712698597 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.48056625237411 bayes_pls_golite062009
  • DNA binding
    		•  1.44496421928708 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • transcription factor activity
    		•  0.825973629967327 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.77755643935497 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.702449673647117 bayes_pls_golite062009
  • nuclease activity
    		•  0.29926900436997 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle