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Protein Overview: PNP2_ARATH

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..748] PSI-BLAST 154.0 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
2 View Details [749..922] PSI-BLAST 16.0 Catalytic domain of E. coli RNase E
3 View Details [923..991] PSI-BLAST 3.69897 Solution structure of the S1 RNA binding domain from human hypothetical protein BAA11502

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • ribonuclease activity
  • 3.62650207668685 bayes_pls_golite062009
  • transcription regulator activity
  • 2.64513435028798 bayes_pls_golite062009
  • exoribonuclease activity
  • 2.49584565422948 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 2.46667410843173 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 2.04350689362549 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 2.04350689362549 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 2.04218282227834 bayes_pls_golite062009
  • RNA binding
  • 1.96263727771326 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 1.40738369517171 bayes_pls_golite062009
  • structural constituent of ribosome
  • 1.39921751192978 bayes_pls_golite062009
  • structural molecule activity
  • 1.14103195122487 bayes_pls_golite062009
  • ligase activity
  • 1.06979791212194 bayes_pls_golite062009
  • transcription termination factor activity
  • 1.01993495617192 bayes_pls_golite062009
  • binding
  • 0.953779727473657 bayes_pls_golite062009
  • nucleic acid binding
  • 0.868294430479847 bayes_pls_golite062009
  • ATP-dependent peptidase activity
  • 0.66778558090199 bayes_pls_golite062009
  • carbohydrate kinase activity
  • 0.51810239718467 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
  • 0.504302440847948 bayes_pls_golite062009
  • DNA binding
  • 0.42372608430605 bayes_pls_golite062009
  • 0.416217645025381 bayes_pls_golite062009
  • hydrolase activity
  • 0.355379071501158 bayes_pls_golite062009
  • catalytic activity
  • 0.10089766806364 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.0287026367466632 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • ribonuclease activity
  • 3.50336342658233 bayes_pls_golite062009
  • nucleic acid binding
  • 2.61119285841387 bayes_pls_golite062009
  • DNA binding
  • 2.12131488750007 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 2.04350689362549 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 2.04350689362549 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 2.04218282227834 bayes_pls_golite062009
  • RNA binding
  • 1.90051536476766 bayes_pls_golite062009
  • binding
  • 1.81248034004657 bayes_pls_golite062009
  • exoribonuclease activity
  • 1.69948951519417 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 1.66992550564008 bayes_pls_golite062009
  • structural constituent of ribosome
  • 1.28570711234646 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.10289736160471 bayes_pls_golite062009
  • ligase activity
  • 1.06979791212194 bayes_pls_golite062009
  • structural molecule activity
  • 1.00355706247361 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.96886436248958 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
  • 0.504302440847948 bayes_pls_golite062009
  • 0.416217645025381 bayes_pls_golite062009
  • transcription regulator activity
  • 0.398606646713208 bayes_pls_golite062009
  • hydrolase activity
  • 0.357828165699872 bayes_pls_golite062009
  • translation regulator activity
  • 0.22908707234671 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 0.223941674251642 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.179682348023561 bayes_pls_golite062009
  • nuclease activity
  • 0.138830469179211 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.0717589400404304 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend

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    Created and Maintained by: Michael Riffle