| Protein: | PNP2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 991 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNP2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
698.0 | [0..21] | [748..2] |
|
Region A: Residues: [1-748] |
1 11 21 31 41 51
| | | | | |
1 MSSIVNRASS ASLPNFLAWR ALGFRTICSG RLGFAPSVPD SPVSAGTKIL ESFKEEFEVG 60
61 SRVVSFETGK IARFANGSVV LGMDETKVLS TVTCAKTDSP RDFLPLTVDY QEKQYAQGLI 120
121 PNTYMRREGA PKERELLCGR LIDRPIRPLF PTGFYHEVQI MASVLSSDGK QDPDILAANA 180
181 SSAALMLSDV PWGGPIGVIR IGRICGQFVV NPTMDELSSS DLNLIYACTR DKTMMIDVQS 240
241 REISEKDLAA ALRLAHPEAV KYLDPQIRLA EKAGKQKKEY KLSMLSDKTL EKVADLAATR 300
301 IESVFTDPSY GKFERGEALD NIGKDVRKVF EEEGDQESLS ILPKAVDTVR KKVVRSRMIS 360
361 DGFRVDGRHV DEVRPIYCES HYLPALHGSA LFSRGDTQVL CTVTLGAPAE AQSLDSLVGP 420
421 PKKRFMLHYS FPPYCTNEVG KRGGLNRREV GHGTLAEKAL LAVLPPEEAF PYTIRINSEV 480
481 MSSDGSTSMA SVCGGSMALM DAGIPLRAHV AGVSVGLITD VDPSSGEIKD YRIVTDILGL 540
541 EDHLGDMDFK IAGTRDGVTA IQLDIKPAGI PLDIVCESLE NAREARLQIL DHMERNINSP 600
601 RGQDGAYSPR LATLKYSNDS LRTLIGPMGV LKRKIEVETG ARLSIDNGTL TIVAKNQDVM 660
661 EKAQEQVDFI IGRELVVGGV YKGTVSSIKE YGAFVEFPGG QQGLLHMSEL SHEPVSKVSD 720
721 VLDIGQCITT MCIETDVRGN IKLSRKAL
|
| Detection Method: |  |
| Confidence: | 154.0 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ribonuclease activity | 3.62650207668685 | bayes_pls_golite062009 |
| transcription regulator activity | 2.64513435028798 | bayes_pls_golite062009 |
| exoribonuclease activity | 2.49584565422948 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 2.46667410843173 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 2.04350689362549 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 2.04350689362549 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 2.04218282227834 | bayes_pls_golite062009 |
| RNA binding | 1.96263727771326 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 1.40738369517171 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.39921751192978 | bayes_pls_golite062009 |
| structural molecule activity | 1.14103195122487 | bayes_pls_golite062009 |
| ligase activity | 1.06979791212194 | bayes_pls_golite062009 |
| transcription termination factor activity | 1.01993495617192 | bayes_pls_golite062009 |
| binding | 0.953779727473657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.868294430479847 | bayes_pls_golite062009 |
| ATP-dependent peptidase activity | 0.66778558090199 | bayes_pls_golite062009 |
| carbohydrate kinase activity | 0.51810239718467 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.504302440847948 | bayes_pls_golite062009 |
| DNA binding | 0.42372608430605 | bayes_pls_golite062009 |
| 0.416217645025381 | bayes_pls_golite062009 | |
| hydrolase activity | 0.355379071501158 | bayes_pls_golite062009 |
| catalytic activity | 0.10089766806364 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0287026367466632 | bayes_pls_golite062009 |
|
Region A: Residues: [749-922] |
1 11 21 31 41 51
| | | | | |
1 LPKPKRKPAS DAGKDPVMKE SSTVYIENSS VGEIVASMPS IVTPLQKSRL SVPAVVIRTA 60
61 VECNEAEKSS PVNDNDKPRR AATSKPDRKP KSTASKLIAT QKEEEALESI APEETSAECG 120
121 EILKQDGKLK SVSPKNNSTA SNLVSFSKAK KSTMKENLSE NKAEESASVS TRKL
|
| Detection Method: | |
| Confidence: | 16.0 |
| Match: | 2bx2L |
| Description: | Catalytic domain of E. coli RNase E |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [923-991] |
1 11 21 31 41 51
| | | | | |
1 KIGTEMTATV DHVRALGLVL DLGGEIRGMY IFQGDKDKFK KGDTLRVKCT SFNTKGVPVM 60
61 ALVDEEGEE
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1wi5A |
| Description: | Solution structure of the S1 RNA binding domain from human hypothetical protein BAA11502 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ribonuclease activity | 3.50336342658233 | bayes_pls_golite062009 |
| nucleic acid binding | 2.61119285841387 | bayes_pls_golite062009 |
| DNA binding | 2.12131488750007 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 2.04350689362549 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 2.04350689362549 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 2.04218282227834 | bayes_pls_golite062009 |
| RNA binding | 1.90051536476766 | bayes_pls_golite062009 |
| binding | 1.81248034004657 | bayes_pls_golite062009 |
| exoribonuclease activity | 1.69948951519417 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 1.66992550564008 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.28570711234646 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.10289736160471 | bayes_pls_golite062009 |
| ligase activity | 1.06979791212194 | bayes_pls_golite062009 |
| structural molecule activity | 1.00355706247361 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.96886436248958 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.504302440847948 | bayes_pls_golite062009 |
| 0.416217645025381 | bayes_pls_golite062009 | |
| transcription regulator activity | 0.398606646713208 | bayes_pls_golite062009 |
| hydrolase activity | 0.357828165699872 | bayes_pls_golite062009 |
| translation regulator activity | 0.22908707234671 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.179682348023561 | bayes_pls_golite062009 |
| nuclease activity | 0.138830469179211 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.0717589400404304 | bayes_pls_golite062009 |
