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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PNP2_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIVNRASS ASLPNFLAWR ALGFRTICSG RLGFAPSVPD SPVSAGTKIL ESFKEEFEVG  60
   61 SRVVSFETGK IARFANGSVV LGMDETKVLS TVTCAKTDSP RDFLPLTVDY QEKQYAQGLI 120
  121 PNTYMRREGA PKERELLCGR LIDRPIRPLF PTGFYHEVQI MASVLSSDGK QDPDILAANA 180
  181 SSAALMLSDV PWGGPIGVIR IGRICGQFVV NPTMDELSSS DLNLIYACTR DKTMMIDVQS 240
  241 REISEKDLAA ALRLAHPEAV KYLDPQIRLA EKAGKQKKEY KLSMLSDKTL EKVADLAATR 300
  301 IESVFTDPSY GKFERGEALD NIGKDVRKVF EEEGDQESLS ILPKAVDTVR KKVVRSRMIS 360
  361 DGFRVDGRHV DEVRPIYCES HYLPALHGSA LFSRGDTQVL CTVTLGAPAE AQSLDSLVGP 420
  421 PKKRFMLHYS FPPYCTNEVG KRGGLNRREV GHGTLAEKAL LAVLPPEEAF PYTIRINSEV 480
  481 MSSDGSTSMA SVCGGSMALM DAGIPLRAHV AGVSVGLITD VDPSSGEIKD YRIVTDILGL 540
  541 EDHLGDMDFK IAGTRDGVTA IQLDIKPAGI PLDIVCESLE NAREARLQIL DHMERNINSP 600
  601 RGQDGAYSPR LATLKYSNDS LRTLIGPMGV LKRKIEVETG ARLSIDNGTL TIVAKNQDVM 660
  661 EKAQEQVDFI IGRELVVGGV YKGTVSSIKE YGAFVEFPGG QQGLLHMSEL SHEPVSKVSD 720
  721 VLDIGQCITT MCIETDVRGN IKLSRKALLP KPKRKPASDA GKDPVMKESS TVYIENSSVG 780
  781 EIVASMPSIV TPLQKSRLSV PAVVIRTAVE CNEAEKSSPV NDNDKPRRAA TSKPDRKPKS 840
  841 TASKLIATQK EEEALESIAP EETSAECGEI LKQDGKLKSV SPKNNSTASN LVSFSKAKKS 900
  901 TMKENLSENK AEESASVSTR KLKIGTEMTA TVDHVRALGL VLDLGGEIRG MYIFQGDKDK 960
  961 FKKGDTLRVK CTSFNTKGVP VMALVDEEGE E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle