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Protein Overview: gi|25411745, gi|...

General Information:
Name(s) found: gi|3757516 [NCBI NR]
gi|25411745 [NCBI NR]
gi|15227315 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|3757516|gb|AAC64218.1| disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] [NCBI NR]
  • pir||C84545 probable disease resistance protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15227315|ref|NP_179279.1| disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1109 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    apoptosis [IEA]
    defense response [ISS]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA]
    transmembrane receptor activity [IEA]
    protein binding [IEA]
    nucleoside-triphosphatase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSRTW NYRVFASFHG PDVRKSFLSH FRKQFICNGI TMFDDQKIVR SQTIAPSLTQ  60
   61 GIRESKISIV ILSKNYASST WCLNELLEIL KCREDIGQIV MTVFYGVDPS DVRKQTGEFG 120
  121 TVFNKTCARR TEKERRNWSQ ALNVVGNIAG EHFLNWDNEA EMIEKIARDV SEKLNMTPSS 180
  181 DFDGMVGIEA HLKEMEVLLD FDYDGVKIVG IFGPAGIGKT TIARALHSLL LFKKFQLTCF 240
  241 VDNLRGSYPI GIDEYGLKLR LQEHLLSKIL NQDGMRISHL GAVKERLCDM KVLIILDDVN 300
  301 DVKQLEALAN DTTWFGPGSR VIVTTENKEI LQRHGIDNMY HVGFPSDEKA MEILCGYAFK 360
  361 QSSPRPGFNY LAQKVTWLCG NLPLGLRVVG SSLRGKKEDE WKSVIRRLDT IIDRDIEDVL 420
  421 RVGYESLHEN EQSLFLHIAV FFNCKDVDLV KAMLADDNLD IAHGLKILVN KSLIYISTTG 480
  481 EIRMHKLLQQ VGRQAINRQE PWKRLILTNA QEICYVLEND KGTGVVSGIS FDTSGISEVI 540
  541 LSNRALRRMS NLRFLSVYKT RHDGNNIMHI PEDMKFPPRL RLLHWEAYPS KSLPLGFCLE 600
  601 NLVELNMKDS QLEKLWEGTQ LLTNLKKMDL SRSVHLKELP DLSNATNLER LELCDCRALV 660
  661 ELPKSIGNLH KLENLVMANC ISLEVIPTHI NLASLEHITM TGCSRLKTFP DFSTNIERLL 720
  721 LIGTSVEEVP ASIRHWSSLS DFCIKNNEDL KSLTYFPEKV ELLDLSYTDI EKIPDCIKGF 780
  781 HGLKSLDVAG CRKLTSLPEL PMSLGLLVAL DCESLEIITY PLNTPSARLN FTNCFKLGEE 840
  841 SRRLIIQRCA TQFLDGYACL PGRVMPDEFN QRTSGNNSLN IRLSSASFKF KACVVISPNQ 900
  901 QQHSWEHTDI RCIVGSYNKV ICVEHPNEST RIQTEHLCIF HGSVSEVSSN EALFEFCIDA 960
  961 SNQFDNFKIL ECGVRILTNE PERSSKKTVS RGLRSHAKIL KACLHKRKQK KMIGYLLKEE1020
 1021 FGLPRDNRII EVDEDNNNDH TVSLDSASDN VEGKEKPIDC WSWLCICFDL SNIVRNMGKL1080
 1081 VLGKETTESI DGGVLHEYST RKDDDVTMG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..173] FFAS03 4.53 Toll-like receptor 1, TLR1
    2 View Details [174..342] PSI-BLAST 10.0 Structure of the apoptotic protease-activating factor 1 bound to ADP
    3 View Details [343..866] PSI-BLAST 22.154902 No description for 2z63A was found.
    4 View Details [867..948] PSI-BLAST 16.30103 The molecular structure of toll-like receptor 3 ligand binding domain
    5 View Details [949..1109] PSI-BLAST 29.09691 No description for 2omtA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.166909062418251 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle