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Protein Overview: PEP_ARATH

General Information:
Name(s) found: PEP_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 495 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: gynoecium development [IMP]
    shoot development [IMP]
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN  60
   61 DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC EETRARIKVL DGPVNTPDRI 120
  121 VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL 180
  181 IGKQGSLIKS IVENSGASVR ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR 240
  241 FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER 300
  301 DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG 360
  361 ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE QLIQEFIINH KEPVSVSGGY 420
  421 ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE 480
  481 YRPASDVGGY SSYNL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..290] PSI-BLAST 33.39794 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    2 View Details [291..495] PSI-BLAST 12.09691 No description for 2hh2A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.09002897694881 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.55336640491561 bayes_pls_golite062009
  • RNA binding
    		•  2.47373172667773 bayes_pls_golite062009
  • binding
    		•  1.9759530321894 bayes_pls_golite062009
  • DNA binding
    		•  1.83809666640016 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.28199205469179 bayes_pls_golite062009
  • transcription factor activity
    		•  1.21526211005888 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.05717140831527 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.01993495617192 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.97496043954059 bayes_pls_golite062009
    		• 0.966603287421221 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.85691075793641 bayes_pls_golite062009
  • structural molecule activity
    		•  0.734332455050128 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.702449673647117 bayes_pls_golite062009
  • protein binding
    		•  0.523813050066193 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.449277083957511 bayes_pls_golite062009
  • mRNA binding
    		•  0.403794675006504 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.40223812695012 bayes_pls_golite062009
  • translation regulator activity
    		•  0.22908707234671 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.179682348023561 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.13299060447839 bayes_pls_golite062009
  • catalytic activity
    		•  0.10089766806364 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0560158842173433 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle