| Protein: | PEP_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 495 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEP_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
235.0 | [0..21] | [483..52] |
|
Region A: Residues: [1-290] |
1 11 21 31 41 51
| | | | | |
1 MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN 60
61 DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC EETRARIKVL DGPVNTPDRI 120
121 VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL 180
181 IGKQGSLIKS IVENSGASVR ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR 240
241 FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL
|
| Detection Method: |  |
| Confidence: | 33.39794 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.09002897694881 | bayes_pls_golite062009 |
| nucleic acid binding | 2.55336640491561 | bayes_pls_golite062009 |
| RNA binding | 2.47373172667773 | bayes_pls_golite062009 |
| binding | 1.9759530321894 | bayes_pls_golite062009 |
| DNA binding | 1.83809666640016 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.28199205469179 | bayes_pls_golite062009 |
| transcription factor activity | 1.21526211005888 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.05717140831527 | bayes_pls_golite062009 |
| transcription termination factor activity | 1.01993495617192 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.97496043954059 | bayes_pls_golite062009 |
| 0.966603287421221 | bayes_pls_golite062009 | |
| sequence-specific DNA binding | 0.85691075793641 | bayes_pls_golite062009 |
| structural molecule activity | 0.734332455050128 | bayes_pls_golite062009 |
| ribonuclease activity | 0.702449673647117 | bayes_pls_golite062009 |
| protein binding | 0.523813050066193 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.449277083957511 | bayes_pls_golite062009 |
| mRNA binding | 0.403794675006504 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.40223812695012 | bayes_pls_golite062009 |
| translation regulator activity | 0.22908707234671 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.179682348023561 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.13299060447839 | bayes_pls_golite062009 |
| catalytic activity | 0.10089766806364 | bayes_pls_golite062009 |
| transcription factor binding | 0.0560158842173433 | bayes_pls_golite062009 |
|
Region A: Residues: [291-495] |
1 11 21 31 41 51
| | | | | |
1 ARREPLFLER DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS 60
61 YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE QLIQEFIINH 120
121 KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP 180
181 TLTGQTYGSE YRPASDVGGY SSYNL
|
| Detection Method: | |
| Confidence: | 12.09691 |
| Match: | 2hh2A |
| Description: | No description for 2hh2A was found. |
