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Protein Overview: PUB53_ARATH

General Information:
Name(s) found: PUB53_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 819 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein amino acid phosphorylation [IEA]
    protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    ATP binding [IEA]
    protein kinase activity [IEA]
    protein serine/threonine kinase activity [IEA]
    kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSFFKNSYL DPKAVRAQLP KRADLAAPSE PMTVALAISG SIKSKNVIKW ALNKFGSDKN  60
   61 VTFKLIHIHP KITTLPTASG NIVSISEELE EVAAAYRQKV MQETKETLLK PFKKMCERKK 120
  121 LKIDETRFES SLTKVAVELQ VLESNSVAVA ITKEVNQHLI SNLIIGRSSQ AASSRNYDIT 180
  181 ASISASVSNL CTVYVVSNGG VHILAKDTSD TERNDTSIES GFERTSSSCS SGSGANSDVM 240
  241 SNALKSNPHT LSNKRMQNLP TIVRGVSVPM ETSSTESDET KKRSSDAAEE ASKRSSPETS 300
  301 RSVSWNPQFR DFDERKDAMS SMSSNFEYGN VVTPLGHYFT DNQDTLNEIS KLRAELRHAH 360
  361 EMYAVAQVET LDASRKLNEL KFEELTLLEH ETKGIAKKET EKFEQKRREE REAAQRREAE 420
  421 MKATHEAKEK EKLEESSLVA PKLQYQEFTW EEIINATSSF SEDLKIGMGA YGDVYKCNLH 480
  481 HTIAAVKVLH SAESSLSKQF DQELEILSKI RHPHLVLLLG ACPDHGALVY EYMENGSLED 540
  541 RLFQVNDSQP IPWFVRLRIA WEVASALVFL HKSKPTPIIH RDLKPANILL NHNFVSKVGD 600
  601 VGLSTMIQAA DPLSTKFTMY KQTSPVGTLC YIDPEYQRTG RISPKSDVYA FGMIILQLLT 660
  661 GQQAMALTYT VETAMENNND DELIQILDEK AGNWPIEETR QLAALALQCT ELRSKDRPDL 720
  721 EDQILPVLES LKKVADKARN SLSAAPSQPP SHFFCPLLKD VMKEPCIAAD GYTYDRRAIE 780
  781 EWMENHRTSP VTNSPLQNVN LLPNHTLYAA IVEWRNRNQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] FFAS03 4.18 "Hypothetical" protein MJ0577
    2 View Details [183..745] PSI-BLAST 90.69897 No description for 2h8hA was found.
    3 View Details [746..819] PSI-BLAST 58.0 No description for 2qoqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.41117326920761 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.26442306623052 bayes_pls_golite062009
  • ligase activity
    		•  1.03935946034745 bayes_pls_golite062009
  • catalytic activity
    		•  0.787684509305028 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.458285295466831 bayes_pls_golite062009
  • transferase activity
    		•  0.430210086388799 bayes_pls_golite062009
  • DNA binding
    		•  0.360053842784207 bayes_pls_golite062009
  • protein binding
    		•  0.0453128337458996 bayes_pls_golite062009
    2
    Term Confidence Notes
  • protein kinase activity
    		•  5.4586557943719 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  5.04467222534257 bayes_pls_golite062009
  • kinase activity
    		•  4.85903980916957 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.63692708178478 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  4.46381887831481 bayes_pls_golite062009
  • transferase activity
    		•  3.26787750561728 bayes_pls_golite062009
  • protein tyrosine kinase activity
    		•  2.8153155526437 bayes_pls_golite062009
  • binding
    		•  2.74863538127007 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.40586892801446 bayes_pls_golite062009
  • signal transducer activity
    		•  2.40586892801446 bayes_pls_golite062009
  • receptor signaling protein activity
    		•  2.10379226653669 bayes_pls_golite062009
  • ATP binding
    		•  1.97600611746091 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  1.93596671856664 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  1.90928021591891 bayes_pls_golite062009
  • receptor signaling protein serine/threonine kinase activity
    		•  1.81249386965144 bayes_pls_golite062009
  • molecular adaptor activity
    		•  1.81145713371725 bayes_pls_golite062009
  • transmembrane receptor protein kinase activity
    		•  1.7769021678395 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  1.6878868450299 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  1.65732943334212 bayes_pls_golite062009
  • ribonucleotide binding
    		•  1.65726906484847 bayes_pls_golite062009
  • purine nucleotide binding
    		•  1.63763394711025 bayes_pls_golite062009
  • nucleotide binding
    		•  1.63195828048121 bayes_pls_golite062009
  • SH3/SH2 adaptor activity
    		•  1.59474164216385 bayes_pls_golite062009
  • receptor activity
    		•  1.57112777506542 bayes_pls_golite062009
  • transmembrane receptor protein tyrosine kinase activity
    		•  1.4571078357189 bayes_pls_golite062009
  • protein binding
    		•  1.22565748038754 bayes_pls_golite062009
  • catalytic activity
    		•  1.21655087018101 bayes_pls_golite062009
  • protein binding, bridging
    		•  0.83823250804321 bayes_pls_golite062009
  • MAP kinase activity
    		•  0.81943579965027 bayes_pls_golite062009
  • MAP kinase kinase activity
    		•  0.610230065465794 bayes_pls_golite062009
  • cyclin-dependent protein kinase activity
    		•  0.499492353295369 bayes_pls_golite062009
  • magnesium ion binding
    		•  0.393328812780268 bayes_pls_golite062009
  • insulin receptor activity
    		•  0.35140991120688 bayes_pls_golite062009
  • insulin binding
    		•  0.326213234151689 bayes_pls_golite062009
  • phosphoinositide 3-kinase binding
    		•  0.30293890086301 bayes_pls_golite062009
  • kinase binding
    		•  0.26752427107238 bayes_pls_golite062009
  • transforming growth factor beta receptor activity
    		•  0.26602283402868 bayes_pls_golite062009
  • transmembrane receptor protein serine/threonine kinase activity
    		•  0.26602283402868 bayes_pls_golite062009
  • growth factor binding
    		•  0.0526340287295695 bayes_pls_golite062009
  • PTB domain binding
    		•  0.0449060071013108 bayes_pls_golite062009
  • protein kinase binding
    		•  0.00674998152095019 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle