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Protein Overview: RUBP1_ARATH

General Information:
Name(s) found: RUBP1_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: NEDD8-specific protease activity [IDA]
    cysteine-type peptidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTSDDDKI LSYEDVVLRR SDLDILNGPI FLNDRVIEFY LSFLSTVHSS TTISLIPPSI  60
   61 AFWISNCPDT EYLKDFMKPL NLRDKDLLIL PVNDNSNVEV AEGGLHWSLL VYYKEANTFV 120
  121 HHDSYMGVNR WSAKQLFKAV SPFVSNGDAS YKECTDTPQQ KNGYDCGVFL LATARVICEW 180
  181 FSSGGMKNRD ELWFANVKET VPDLVNHLRE EILALIKKLM SESVSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 34.39794 NEDD8 protease

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cysteine-type peptidase activity
    		•  5.93560668185539 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  5.48721952122524 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  4.73623517114533 bayes_pls_golite062009
  • ubiquitin thiolesterase activity
    		•  3.38737606974088 bayes_pls_golite062009
  • thiolester hydrolase activity
    		•  1.90178501880966 bayes_pls_golite062009
  • SUMO-specific protease activity
    		•  1.6602460763044 bayes_pls_golite062009
  • peptidase activity
    		•  1.39702589518384 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  1.28597643058503 bayes_pls_golite062009
  • catalytic activity
    		•  1.05972260874031 bayes_pls_golite062009
  • protein binding
    		•  0.755467947031123 bayes_pls_golite062009
  • hydrolase activity
    		•  0.612664640888088 bayes_pls_golite062009
  • binding
    		•  0.426262567794169 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.366512660710683 bayes_pls_golite062009
  • cysteine-type endopeptidase activity
    		•  0.125393771316362 bayes_pls_golite062009
  • NEDD8-specific protease activity
    		•  0.09564496961635 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle