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Protein Overview: gi|6227009, gi|2...

General Information:
Name(s) found: gi|6227009 [NCBI NR]
gi|25404564 [NCBI NR]
gi|22330441 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|6227009|gb|AAF06045.1|AC009513_1 Strong similarity to gb|AF098963 disease resistance protein RPP1-WsB from Arabidopsis thaliana and contains 2 PF|00931 NB-ARC domains and 5 PF|00560 Leucine Rich Repeats [NCBI NR]
  • pir||E96682 hypothetical protein F12P19.1 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22330441|ref|NP_176760.2| disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1036 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    apoptosis [IEA]
    defense response [ISS]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA]
    transmembrane receptor activity [IEA]
    nucleoside-triphosphatase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSMIASRQQ SQRSCPICAT PFPSSSSSHK WTHQVFPSFR GEDVRRGFLS HIHKEFQRKG  60
   61 ITPFIDNEIK RGESIGLEII HAIRESKIAI VLLSRNYASS SWCLDELVEI MKCKEEFSQI 120
  121 VIPIFYRVDP SDVKKLTGNF GNVFKNNCVG KTNEVIRKWR QALAKMGTTT GYDSRNWDNE 180
  181 ATMIENIATD ISNMLNYSTP SRDFDGLIGM RAHMKVMEPM LCLHSDEVRM IGIWGPSGIG 240
  241 KTTIARILFS QFSDSFELSV FMENVKELMY TRPVCSDEYS AKLHLQKQFM SQIINHKDIE 300
  301 IPHLGVVEDR LKDKKVFIVL DNIDQSIQLD AIAKESRWFG HGSRIIITTQ DRKLLKAHDG 360
  361 INHIYNVNFP SAYEACQIFC MYAFGQKFPK DGFEELAWEV AKLLGGLPLG LRVMGSHFRG 420
  421 MSKHEWINAL PRLRTRLDAN IQSILKFSYN ALCEEDKDLF LYIACLFNNK RIEKVEEHLA 480
  481 EKSLNVKQGL HVLTEKSLIS IEGGRIKMHN LLEQLGKEIV RHGLGHQPIR EPGKRQFLVD 540
  541 TRDICELLTN DTGSKSVIGI HFYSSELSSE LNISERAFEG MPNLKFLRFY YRYGDESDKL 600
  601 YLPQGLNYLS QKLKILEWDH FPLTCMPSNF CTEYLVELNM RFSKLHKLWE GNRPLANLNW 660
  661 MYLNHSKILK ELPDLSTATN LQELFLVKCS SLVELPSSIG KATNLQKLYL NMCTSLVELP 720
  721 SSIGNLHKLQ KLTLNGCSKL EVLPANINLE SLDELDLTDC LVLKRFPEIS TNIKVLKLLR 780
  781 TTIKEVPSSI KSWPRLRDLE LSYNQNLKGF MHALDIITTM YFNDIEMQEI PLWVKKISRL 840
  841 QTLILNGCKK LVSLPQLPDS LSYLKVVNCE SLERLDCSFH NPKMSLGFIN CLKLNKEAKE 900
  901 LIIQITTKCT VLPGREVPVY FTHRTKNGSS LRVNLNRRPL STASRFKACI LLVNKYCKEN 960
  961 EVKEVFGRKM MKASYCIIDL GLDVQCRPTH HFLPPSLTEH LYIFDFEADV TSNELFCDFQ1020
 1021 VDSNEMVIKE CGIIQL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] Pfam 55.69897 No description for PF01582.12 was found. No confident structure predictions are available.
    2 View Details [179..420] PSI-BLAST 15.69897 Structure of the apoptotic protease-activating factor 1 bound to ADP
    3 View Details [421..527] PSI-BLAST 5.30103 Rab geranylgeranyltransferase alpha-subunit, N-terminal domain; Rab geranylgeranyltransferase alpha-subunit, insert domain; Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
    4 View Details [528..1036] PSI-BLAST 14.69897 No description for 2z64A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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